RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 ST6GALNAC6Q969X2 333 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 FLYWCH2Q96CP2 140 aaKnown RBP11.78□□□□□ -0.52
CLIP1-216ENST00000541410 RAB39BQ96DA2 213 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 OR8B2Q96RD0 313 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 PBDC1Q9BVG4 233 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 SIRT7Q9NRC8 400 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 FLNCQ14315 2725 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 VPS13CQ709C8 3753 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 CA2P00918 260 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 TMEM41BQ5BJD5 291 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 FFAR4Q5NUL3 377 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 C10orf55Q5SWW7 151 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 ZNF787Q6DD87 383 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 LFNGQ8NES3 379 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 LHX4Q969G2 390 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 ENY2Q9NPA8 101 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 USP24Q9UPU5 2620 aa11.78□□□□□ -0.52
CLIP1-216ENST00000541410 TRBV23-1A0A0A0MS06 115 aa11.77□□□□□ -0.52
CLIP1-216ENST00000541410 TEX50A0A1B0GTY4 177 aa11.77□□□□□ -0.52
CLIP1-216ENST00000541410 ARF6P62330 175 aa11.77□□□□□ -0.52
CLIP1-216ENST00000541410 SERF2P84101 59 aa11.77□□□□□ -0.52
CLIP1-216ENST00000541410 ATP6V1FQ16864 119 aa11.77□□□□□ -0.52
CLIP1-216ENST00000541410 SLC24A4Q8NFF2 622 aa11.77□□□□□ -0.52
CLIP1-216ENST00000541410 TMEM186Q96B77 213 aa11.77□□□□□ -0.52
CLIP1-216ENST00000541410 TMPRSS5Q9H3S3 457 aa11.77□□□□□ -0.52
CLIP1-216ENST00000541410 TPSG1Q9NRR2 321 aa11.77□□□□□ -0.52
CLIP1-216ENST00000541410 CRYBG3Q68DQ2 2970 aa11.77□□□□□ -0.53
CLIP1-216ENST00000541410 KBTBD11O94819 623 aa11.77□□□□□ -0.53
CLIP1-216ENST00000541410 SNAPINO95295 136 aa11.77□□□□□ -0.53
CLIP1-216ENST00000541410 POU2AF1Q16633 256 aa11.77□□□□□ -0.53
CLIP1-216ENST00000541410 SP5Q6BEB4 398 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-216ENST00000541410 MOB3BQ86TA1 216 aa11.77□□□□□ -0.53
CLIP1-216ENST00000541410 CLDND2Q8NHS1 167 aa11.77□□□□□ -0.53
CLIP1-216ENST00000541410 NEIL1Q96FI4 390 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-216ENST00000541410 KIAA1456Q9P272 454 aa11.77□□□□□ -0.53
CLIP1-216ENST00000541410 A0A1W2PRD5 423 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 A0A1W2PRF3 423 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 A0A1W2PRM7 423 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 NPY1RP25929 384 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 DHRS7BQ6IAN0 325 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-216ENST00000541410 FAM122CQ6P4D5 195 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 TREML4Q6UXN2 200 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 ZNF709Q8N972 641 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 RAB1CQ92928 201 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 TIMD4Q96H15 378 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 SLC35B3Q9H1N7 401 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 PLEKHA3Q9HB20 300 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 ABCA1O95477 2261 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 UTP20O75691 2785 aaKnown RBP11.76□□□□□ -0.53
CLIP1-216ENST00000541410 SPG11Q96JI7 2443 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 A0A087X0M5 115 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 A0A1B0GX30 115 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 MAP1LC3B2A6NCE7 125 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 PRSS46E5RG02 174 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 SLC25A17O43808 307 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 PRB1P04280 392 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 IL6RP08887 468 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-216ENST00000541410 CNTFRP26992 372 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 RPP30P78346 268 aaKnown RBP11.76□□□□□ -0.53
CLIP1-216ENST00000541410 ICAM4Q14773 271 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 MLANAQ16655 118 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 VWC2Q2TAL6 325 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 PDLIM3Q53GG5 364 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-216ENST00000541410 IQCF2Q8IXL9 164 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 PNKDQ8N490 385 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 LINC00311Q8N616 119 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 Q8N7P7 452 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 CLRN3Q8NCR9 226 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 OR10G4Q8NGN3 311 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 OR10G9Q8NGN4 311 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 OR10G7Q8NGN6 311 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 OSR1Q8TAX0 266 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-216ENST00000541410 PARD6GQ9BYG4 376 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-216ENST00000541410 MAP1LC3BQ9GZQ8 125 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 MIOXQ9UGB7 285 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 PRNDQ9UKY0 176 aa11.76□□□□□ -0.53
CLIP1-216ENST00000541410 APELAP0DMC3 54 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 ATF4P18848 351 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-216ENST00000541410 ARSJQ5FYB0 599 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-216ENST00000541410 DPPA3Q6W0C5 159 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 OR4C13Q8NGP0 309 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 ZNF596Q8TC21 504 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 SSMEM1Q8WWF3 244 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 SLC39A9Q9NUM3 307 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 PUS1Q9Y606 427 aaKnown RBP eCLIP11.75□□□□□ -0.53
CLIP1-216ENST00000541410 M0R036 132 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 SCAF4O95104 1147 aaKnown RBP11.75□□□□□ -0.53
CLIP1-216ENST00000541410 SNRNP70P08621 437 aaKnown RBP11.75□□□□□ -0.53
CLIP1-216ENST00000541410 RAB11AP62491 216 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 KLRD1Q13241 179 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 HLA-DRB5Q30154 266 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 DTX2Q86UW9 622 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 CYB561D1Q8N8Q1 229 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 PATZ1Q9HBE1 687 aaKnown RBP11.75□□□□□ -0.53
CLIP1-216ENST00000541410 BET1LQ9NYM9 111 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 WASHC3Q9Y3C0 194 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 KPTNQ9Y664 436 aa11.75□□□□□ -0.53
CLIP1-216ENST00000541410 USP9XQ93008 2570 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-216ENST00000541410 IGLV2-23P01705 113 aa11.74□□□□□ -0.53
CLIP1-216ENST00000541410 HBE1P02100 147 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms