RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 TIMM50Q3ZCQ8 353 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 TM4SF20Q53R12 229 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 ZNF57Q68EA5 555 aaPredicted RBP6.34□□□□□ -1.39
USP28-203ENST00000537490 HOGA1Q86XE5 327 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 TMEM61Q8N0U2 210 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 UXS1Q8NBZ7 420 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 BEST4Q8NFU0 473 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 SECTM1Q8WVN6 248 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 EEF1AKMT3Q96AZ1 226 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 SLC25A38Q96DW6 304 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 BET1LQ9NYM9 111 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 MLXQ9UH92 298 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 SSR3Q9UNL2 185 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 DNAH1Q9P2D7 4330 aa6.34□□□□□ -1.39
USP28-203ENST00000537490 SULT1C2O00338 296 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 UPK2O00526 184 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 SCAF4O95104 1147 aaKnown RBP6.33□□□□□ -1.4
USP28-203ENST00000537490 DHFRP00374 187 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 PPYP01298 95 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 DEFA4P12838 97 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 HIST1H1BP16401 226 aaKnown RBP6.33□□□□□ -1.4
USP28-203ENST00000537490 OR2B8PP59922 312 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 ARPC4P59998 168 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 MSMO1Q15800 293 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 FAM106AQ4KMX7 169 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 OR4A47Q6IF82 309 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 UNQ9165/PRO28630Q6UXU0 137 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 SPAG16Q8N0X2 631 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 ZBTB34Q8NCN2 500 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 OR13F1Q8NGS4 319 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 OR4A5Q8NH83 315 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 IL17DQ8TAD2 202 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 SLC5A7Q9GZV3 580 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 HRASLSQ9HDD0 168 aa6.33□□□□□ -1.4
USP28-203ENST00000537490 TRBV7-1A0A0A6YYK4 115 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 IGHV3-35A0A0C4DH35 117 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 IGLC7A0M8Q6 106 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 A8MWP6 167 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 LCE2BO14633 110 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 RBFOX2O43251 390 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP28-203ENST00000537490 JTBO76095 146 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 HPRT1P00492 218 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 C8orf88P0DMB2 117 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 FXYD4P59646 89 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 POU2AF1Q16633 256 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 ZNF585BQ52M93 769 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 IDNKQ5T6J7 187 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 BTNL8Q6UX41 500 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 ZNF818PQ6ZRF7 136 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 SLC16A13Q7RTY0 426 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 OR10W1Q8NGF6 305 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 OR52B4Q8NGK2 314 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 ZNF502Q8TBZ5 544 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 FCGR1BQ92637 280 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 CXorf58Q96LI9 332 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 OVOL2Q9BRP0 275 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 AUNIPQ9H7T9 357 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 ETV7Q9Y603 341 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 STARD9Q9P2P6 4700 aa6.32□□□□□ -1.4
USP28-203ENST00000537490 LOC102724200A0A096LPH7 203 aaPredicted RBP6.31□□□□□ -1.4
USP28-203ENST00000537490 LOC100506127A0A0U1RQW1 187 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 MEIS3P1A6NDR6 274 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 S1PR2O95136 353 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 RPA2P15927 270 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 NQO2P16083 231 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 PTBP1P26599 531 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP28-203ENST00000537490 GPR183P32249 361 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 SCAND1P57086 179 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 TAS2R31P59538 309 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 CATR1Q13166 79 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 PLET1Q6UQ28 207 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 OR51H1Q8NH63 302 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 GIMAP1Q8WWP7 306 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 AIFM2Q9BRQ8 373 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 GGTLC1Q9BX51 225 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 YTHDF1Q9BYJ9 559 aaKnown RBP6.31□□□□□ -1.4
USP28-203ENST00000537490 COMMD5Q9GZQ3 224 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 TMEM140Q9NV12 185 aa6.31□□□□□ -1.4
USP28-203ENST00000537490 MRPL27Q9P0M9 148 aaKnown RBP6.31□□□□□ -1.4
USP28-203ENST00000537490 A0A0A6YYH2 397 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 TRAV25A0A0B4J276 109 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 TEX50A0A1B0GTY4 177 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 A6NJ64 397 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 TGOLN2O43493 480 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 GNRHRP30968 328 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 MFAP2P55001 183 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 ELLP55199 621 aaPredicted RBP6.3□□□□□ -1.4
USP28-203ENST00000537490 ANKRD55Q3KP44 614 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 AADACL3Q5VUY0 350 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 TMEM17Q86X19 198 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 DMBX1Q8NFW5 382 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 OR5AP2Q8NGF4 316 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 OR1L6Q8NGR2 347 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 MARC2Q969Z3 335 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 SRSF8Q9BRL6 282 aaKnown RBP6.3□□□□□ -1.4
USP28-203ENST00000537490 ZNF436Q9C0F3 470 aaPredicted RBP6.3□□□□□ -1.4
USP28-203ENST00000537490 PLEKHA2Q9HB19 425 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 DIABLOQ9NR28 239 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 UFC1Q9Y3C8 167 aa6.3□□□□□ -1.4
USP28-203ENST00000537490 CSMD3Q7Z407 3707 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms