RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 OR2K2Q8NGT1 345 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 MFSD8Q8NHS3 518 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 MITD1Q8WV92 249 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 C12orf43Q96C57 262 aaKnown RBP2.28□□□□□ -2.04
CD44-235ENST00000532339 FLYWCH2Q96CP2 140 aaKnown RBP2.28□□□□□ -2.04
CD44-235ENST00000532339 SGTBQ96EQ0 304 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 CCDC115Q96NT0 180 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 STACQ99469 402 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 AGMATQ9BSE5 352 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 EMC6Q9BV81 110 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 TMEM100Q9NV29 134 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 TAS2R7Q9NYW3 318 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 OPTCQ9UBM4 332 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 HYOU1Q9Y4L1 999 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 FCGBPQ9Y6R7 5405 aaPredicted RBP2.27□□□□□ -2.05
CD44-235ENST00000532339 IGHV3OR15-7A0A075B7D8 119 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 A0A087X0T9 212 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 IGHV3OR16-9A0A0B4J2B5 98 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 A0A0J9YXV3 536 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 H3BN98 237 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 DNASE2O00115 360 aaPredicted RBP2.27□□□□□ -2.05
CD44-235ENST00000532339 FGF16O43320 207 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 SLC16A7O60669 478 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 FAM228BP0C875 321 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 RAB5AP20339 215 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 CXCR1P25024 350 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 SSTR5P35346 364 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 SYNJ2BPP57105 145 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 KRTAP10-4P60372 401 aaPredicted RBP2.27□□□□□ -2.05
CD44-235ENST00000532339 ACTBP60709 375 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 RAP1AP62834 184 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 ELF3P78545 371 aaPredicted RBP2.27□□□□□ -2.05
CD44-235ENST00000532339 DYNC1I2Q13409 638 aaKnown RBP2.27□□□□□ -2.05
CD44-235ENST00000532339 DGCR6Q14129 220 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 ZNF141Q15928 474 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 ORMDL2Q53FV1 153 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 ZNF691Q5VV52 312 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 C1orf140Q5VVS0 124 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 OR2T2Q6IF00 324 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 SLC35D2Q76EJ3 337 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 NKAIN4Q8IVV8 208 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 TMEM104Q8NE00 496 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 OR11H7Q8NGC8 314 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 NDNFQ8TB73 568 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 TCP10LQ8TDR4 215 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 BAALCQ8WXS3 180 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 CDS1Q92903 461 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 ZNF488Q96MN9 340 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 PRSS27Q9BQR3 290 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 TOLLIPQ9H0E2 274 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 IFI27L2Q9H2X8 130 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 GOLPH3Q9H4A6 298 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 REEP1Q9H902 201 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 C12orf10Q9HB07 376 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 USE1Q9NZ43 259 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 GLTPQ9NZD2 209 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 HHLA2Q9UM44 414 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 ZNF443Q9Y2A4 671 aaPredicted RBP2.27□□□□□ -2.05
CD44-235ENST00000532339 SLC35A3Q9Y2D2 325 aa2.27□□□□□ -2.05
CD44-235ENST00000532339 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.27□□□□□ -2.05
CD44-235ENST00000532339 BZW2Q9Y6E2 419 aaKnown RBP2.27□□□□□ -2.05
CD44-235ENST00000532339 IGLV1-50A0A075B6I6 118 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 DEFB131BA0A096LNP1 70 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 A0A096LPI6 279 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 SYCE1LA8MT33 242 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 CENPXA8MT69 81 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 FAM25EA8MYX2 175 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 IQCF6A8MYZ5 107 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 FAAHO00519 579 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 MAGEB4O15481 346 aaPredicted RBP2.26□□□□□ -2.05
CD44-235ENST00000532339 GMDSO60547 372 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 AHSA1O95433 338 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 GFAPP14136 432 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 TCP1P17987 556 aaKnown RBP2.26□□□□□ -2.05
CD44-235ENST00000532339 HLA-DMBP28068 263 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 HTR1DP28221 377 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 FUSP35637 526 aaKnown RBP eCLIP2.26□□□□□ -2.05
CD44-235ENST00000532339 RBM34P42696 430 aaKnown RBP2.26□□□□□ -2.05
CD44-235ENST00000532339 ESRRGP62508 458 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 CACNG7P62955 275 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 PSG4Q00888 419 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 DEFB116Q30KQ4 102 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 SMARCD3Q6STE5 483 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 SLC16A13Q7RTY0 426 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 WDR86Q86TI4 376 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 LINC01551Q86U37 167 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 LRRC18Q8N456 261 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 C15orf40Q8WUR7 153 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 CHMP6Q96FZ7 201 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 SCGB3A2Q96PL1 93 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 TIMM17AQ99595 171 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 WFDC6Q9BQY6 131 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 SAMD10Q9BYL1 202 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 SLIRPQ9GZT3 109 aaKnown RBP2.26□□□□□ -2.05
CD44-235ENST00000532339 GAL3ST2Q9H3Q3 398 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 MED4Q9NPJ6 270 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 KLK12Q9UKR0 248 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 NDUFAF1Q9Y375 327 aa2.26□□□□□ -2.05
CD44-235ENST00000532339 NOP16Q9Y3C1 178 aaKnown RBP2.26□□□□□ -2.05
CD44-235ENST00000532339 RNF11Q9Y3C5 154 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms