RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ACER3	Q9NUN7	267 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	C1orf123	Q9NWV4	160 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	TRMT112	Q9UI30	125 aa	Known RBP	4.58	□□□□□ -1.68
CD44-231	ENST00000531110	LSM5	Q9Y4Y9	91 aa	Known RBP	4.58	□□□□□ -1.68
CD44-231	ENST00000531110	OR1A2	Q9Y585	309 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	MPC1	Q9Y5U8	109 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	HEBP2	Q9Y5Z4	205 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	KMT2E	Q8IZD2	1858 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	TMEM131	Q92545	1883 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	ITGB4	P16144	1822 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	XIRP1	Q702N8	1843 aa	Known RBP	4.58	□□□□□ -1.68
CD44-231	ENST00000531110	BAZ2B	Q9UIF8	2168 aa	Known RBP	4.57	□□□□□ -1.68
CD44-231	ENST00000531110	FAM231B	A6NCW3	169 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110		H3BMG7	143 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110		J3QLI3	93 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	CLDN5	O00501	218 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	CHST1	O43916	411 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	OR2J3	O76001	311 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF682	O95780	498 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	OR2H2	O95918	312 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	IFITM1	P13164	125 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	MMP9	P14780	707 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	MYOD1	P15172	320 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	AADAC	P22760	399 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	BLVRB	P30043	206 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-231	ENST00000531110	PRDX3	P30048	256 aa	Known RBP	4.57	□□□□□ -1.68
CD44-231	ENST00000531110	IER3	P46695	156 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	GALR1	P47211	349 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	SGSH	P51688	502 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	FUT6	P51993	359 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF133	P52736	654 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF121	P58317	390 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-231	ENST00000531110	OSTN	P61366	133 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	RND3	P61587	244 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	PSG4	Q00888	419 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	KLRB1	Q12918	225 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	HES1	Q14469	280 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	ELOC	Q15369	112 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	CCL15	Q16663	113 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	MPV17L	Q2QL34	196 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	RPL7L1	Q6DKI1	246 aa	Known RBP	4.57	□□□□□ -1.68
CD44-231	ENST00000531110	SLC25A47	Q6Q0C1	308 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	ODF3L1	Q8IXM7	274 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	PRR22	Q8IZ63	422 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	METTL27	Q8N6F8	245 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-231	ENST00000531110	OR8B12	Q8NGG6	310 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	OR10G8	Q8NGN5	311 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	OR10J6P	Q8NGY7	276 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	OR9G1	Q8NH87	305 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	4.57	□□□□□ -1.68
CD44-231	ENST00000531110	ABHD14B	Q96IU4	210 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	TMEM191A	Q9H0A3	160 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	ELOVL3	Q9HB03	270 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	CISH	Q9NSE2	258 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	CLCF1	Q9UBD9	225 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110	NHS	Q6T4R5	1651 aa		4.57	□□□□□ -1.68
CD44-231	ENST00000531110		A0A1B0GV50	99 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	TINCR	A0A1B0GVN0	87 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	OR4C46	A6NHA9	309 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	FOXI3	A8MTJ6	420 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF736	B4DX44	427 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-231	ENST00000531110		C9JAW5	83 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110		K7ENP7	123 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	ZNHIT1	O43257	154 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	PITX3	O75364	302 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	IGKV5-2	P06315	115 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	SP9	P0CG40	484 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	CNTFR	P26992	372 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	RBMX	P38159	391 aa	Known RBP	4.56	□□□□□ -1.68
CD44-231	ENST00000531110	TNFSF9	P41273	254 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	NKX2-1	P43699	371 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF83	P51522	516 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	GNB2	P62879	340 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	MZT1	Q08AG7	82 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	MPV17L2	Q567V2	206 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	TSPO2	Q5TGU0	170 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	DMKN	Q6E0U4	476 aa	Predicted RBP	4.56	□□□□□ -1.68
CD44-231	ENST00000531110	LCN15	Q6UWW0	184 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	SHISA6	Q6ZSJ9	500 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	NFE4	Q86UQ8	179 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF615	Q8N8J6	731 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	CYB561D1	Q8N8Q1	229 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	TMEM178A	Q8NBL3	297 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF740	Q8NDX6	193 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	CLDND2	Q8NHS1	167 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	JOSD2	Q8TAC2	188 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	STAG3L4	Q8TBR4	150 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	RPS4Y2	Q8TD47	263 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	TMEM255B	Q8WV15	326 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	TMEM101	Q96IK0	257 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	PRADC1	Q9BSG0	188 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	GPR174	Q9BXC1	333 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	DEFB129	Q9H1M3	183 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	MANBAL	Q9NQG1	85 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	IDI2-AS1	Q9NZ38	188 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF581	Q9P0T4	197 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	HIGD1A	Q9Y241	93 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	HES2	Q9Y543	173 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	TRAPPC1	Q9Y5R8	145 aa		4.56	□□□□□ -1.68
CD44-231	ENST00000531110	SPCS1	Q9Y6A9	102 aa		4.56	□□□□□ -1.68

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