RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 IGHV3-21A0A0B4J1V1 117 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 NTN3O00634 580 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 IGFBP2P18065 325 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 IGHV1-2P23083 117 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 COX7A1P24310 79 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 GNB2P62879 340 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 RPL8P62917 257 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 ZNF146Q15072 292 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 SAP30LQ9HAJ7 183 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 DNAJC4Q9NNZ3 241 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 TRBV6-6A0A0A6YYG2 114 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 ANOS1P23352 680 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 RPL30P62888 115 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 Q0VFX4 171 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 AAMDCQ9H7C9 122 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 IDI2-AS1Q9NZ38 188 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 PLA2G2EQ9NZK7 142 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 WDR83OSQ9Y284 106 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 MKRN2OSH3BPM6 223 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 CECR9P0C854 216 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 HINT1P49773 126 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 TIMD4Q96H15 378 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 SSBP3Q9BWW4 388 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 DLL1O00548 723 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 SIAH2O43255 324 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 IGHV2-70P01814 119 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 CD82P27701 267 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 ADMP35318 185 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 RND2P52198 227 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 PAX9P55771 341 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 CTAG1AP78358 180 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 NHLH1Q02575 133 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 OR2T6Q8NHC8 308 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 NDFIP1Q9BT67 221 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 GNB4Q9HAV0 340 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 ASCL3Q9NQ33 180 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 AMMECR1Q9Y4X0 333 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 PRRX1P54821 245 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 OR4A47Q6IF82 309 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 C14orf144Q96I85 54 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 MAP1LC3CQ9BXW4 147 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 AHRRA9YTQ3 701 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 SERF1AO75920 110 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 OR5AL1P0C617 328 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 OR9G9P0C7N8 305 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 C21orf62-AS1Q17RA5 79 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 CYB5R2Q6BCY4 276 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 VWA1Q6PCB0 445 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 GFRALQ6UXV0 394 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 PROK2Q9HC23 129 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 RNF115Q9Y4L5 304 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 YTHDF2Q9Y5A9 579 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 PGPA6NDG6 321 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 PSPNO60542 156 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 SELENOTP62341 195 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 Q6P435 159 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 MIR17HGQ75NE6 70 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 ATOH7Q8N100 152 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 OCC1Q8TAD7 63 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 SSC4DQ8WTU2 575 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 ZNF714Q96N38 554 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 AGMATQ9BSE5 352 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 C19orf24Q9BVV8 132 aa7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 ZNF430Q9H8G1 570 aaPredicted RBP7.04□□□□□ -1.28
LIMCH1-216ENST00000512820 A8MWL6 223 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 HYPMO75409 117 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 PMCHL1Q16048 86 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 KLK10O43240 276 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 ZNF585BQ52M93 769 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 HCP5Q6MZN7 132 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 WDR82Q6UXN9 313 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 COLCA1Q6ZS62 124 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 TBL2Q9Y4P3 447 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 IGHV3-48P01763 117 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 ARSJQ5FYB0 599 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 FAM201AQ5SY85 155 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 LINC01551Q86U37 167 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 GBGT1Q8N5D6 347 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 SGK494Q96LW2 274 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 TMEM106BQ9NUM4 274 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 ONECUT1Q9UBC0 465 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 DOCK8Q8NF50 2099 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 TRAV9-1A0A075B6T8 112 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 GATA2P23769 480 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 DUTP33316 252 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 NTF4P34130 210 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 WASHC3Q9Y3C0 194 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 TICRRQ7Z2Z1 1910 aa7.03□□□□□ -1.28
LIMCH1-216ENST00000512820 PPIAL4EA0A075B759 164 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 IGHV3-72A0A0B4J1Y9 119 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 C9orf172C9J069 976 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 PPIAL4DF5H284 164 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 M0R296 226 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 PPIAL4FP0DN26 164 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 RIGQ13278 110 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 TEX38Q6PEX7 206 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 NPIPB3Q92617 1050 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 RASL11BQ9BPW5 248 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 DERL1Q9BUN8 251 aa7.02□□□□□ -1.28
LIMCH1-216ENST00000512820 PRDM6Q9NQX0 595 aa7.02□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms