RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 HRASLS2Q9NWW9 162 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 CABIN1Q9Y6J0 2220 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 CGAP01215 116 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 TMEM249Q2WGJ8 235 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 C9orf135Q5VTT2 229 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 HLA-DQA1Q5Y7H0 255 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 OR1L3Q8NH93 324 aa10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 MBNL3Q9NUK0 354 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-213ENST00000511496 KBTBD11-OT1A0A1B0GTJ5 212 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 ZG16O60844 167 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 TUSC2O75896 110 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 HLA-DRB1P01911 266 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 TIGITQ495A1 244 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 IBA57Q5T440 356 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 OOSP2Q86WS3 158 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 FAM168AQ92567 244 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 MMABQ96EY8 250 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 ARHGEF17Q96PE2 2063 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 MT-CO3P00414 261 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 COX8AP10176 69 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 MAP1LC3CQ9BXW4 147 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 PLEK2Q9NYT0 353 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 M0R135 149 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 SIVA1O15304 175 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 PDLIM3Q53GG5 364 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 ZNF799Q96GE5 643 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 C5orf30Q96GV9 206 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 SPATA25Q9BR10 227 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 MS4A5Q9H3V2 200 aa10.05□□□□□ -0.8
LIMCH1-213ENST00000511496 TET1Q8NFU7 2136 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 TMEM265A0A087WTH1 108 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 TNFSF14O43557 240 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 IFI6P09912 130 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 SPINK8P0C7L1 97 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 STAG3L2P0CL84 134 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 FCGR2BP31994 310 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 INSL3P51460 131 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 ZNF138P52744 262 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 SFTPA2Q8IWL1 248 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 FGFRL1Q8N441 504 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 PIGCQ92535 297 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 TSACCQ96A04 125 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 SLC17A4Q9Y2C5 497 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 SPEGQ15772 3267 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 DYSFO75923 2080 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 KLF7O75840 302 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 ARL4DP49703 201 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 RBM11P57052 281 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 GDF5OSQ5U4N7 250 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 LYSMD4Q5XG99 296 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 MIC13Q5XKP0 118 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 ARPC1AQ92747 370 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 HSPB8Q9UJY1 196 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 IGHV1-24A0A0C4DH33 117 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 CXorf1O96002 111 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 GUSBP1Q15486 140 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 INO80CQ6PI98 192 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 OR10D3Q8NH80 312 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 SSMEM1Q8WWF3 244 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 MS4A6AQ9H2W1 248 aa10.04□□□□□ -0.8
LIMCH1-213ENST00000511496 A0A1W2PRE2 83 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 TMEM189A5PLL7 270 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 CLPSP04118 112 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 ANXA2RQ3ZCQ2 193 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 JPT1Q9UK76 154 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 RALYQ9UKM9 306 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 A0A1W2PP55 124 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 IZUMO1RA6ND01 250 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 OR11H12B2RN74 326 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 FOXH1O75593 365 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 BRI3O95415 125 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 SPINK2P20155 84 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 FAM69BQ5VUD6 431 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 TRAT1Q6PIZ9 186 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 TEX45Q8NA69 505 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 OR11H1Q8NG94 326 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 OR11H2Q8NH07 326 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 URB1-AS1Q96HZ7 61 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 PRDM6Q9NQX0 595 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 TRAPPC2LQ9UL33 140 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 F11RQ9Y624 299 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 A0A1W2PNR3 127 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 G6PCP35575 357 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 FAM120AOSQ5T036 256 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 PARM1Q6UWI2 310 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 C1QTNF5Q9BXJ0 243 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 METTL7AQ9H8H3 244 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 ZNF355PQ9NSJ1 428 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 OR2W1Q9Y3N9 320 aa10.03□□□□□ -0.8
LIMCH1-213ENST00000511496 ZNF585BQ52M93 769 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 TMEM164Q5U3C3 297 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 C16orf47Q6ZP98 133 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 TRIB1Q96RU8 372 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 CITED1Q99966 193 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 C20orf78Q9BR46 151 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 TXNDC17Q9BRA2 123 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 SPANXB1Q9NS25 103 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 USF3Q68DE3 2245 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 TRGV10A0A0A0MS01 117 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 KIR2DS1A0A191URI9 304 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms