RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 SLC25A31Q9H0C2 315 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 IGSF23A1L1A6 192 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 CRYGBP07316 175 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 FGF2P09038 288 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 EWSR1Q01844 656 aaKnown RBP eCLIP17.36■□□□□ 0.37
SMC4-221ENST00000489573 HES1Q14469 280 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 KLF17Q5JT82 389 aaPredicted RBP17.36■□□□□ 0.37
SMC4-221ENST00000489573 SLA2Q9H6Q3 261 aa17.36■□□□□ 0.37
SMC4-221ENST00000489573 H3BP45 60 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 LY86O95711 162 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 CD24P25063 80 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 IFITM2Q01629 132 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 EBI3Q14213 229 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 HNF4GQ14541 408 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 MMDQ15546 238 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 OR5B3Q8NH48 314 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 CLCC1Q96S66 551 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 ZNF430Q9H8G1 570 aaPredicted RBP17.35■□□□□ 0.37
SMC4-221ENST00000489573 TPSG1Q9NRR2 321 aa17.35■□□□□ 0.37
SMC4-221ENST00000489573 METTL1Q9UBP6 276 aaKnown RBP17.35■□□□□ 0.37
SMC4-221ENST00000489573 PRRC2AP48634 2157 aaKnown RBP17.34■□□□□ 0.37
SMC4-221ENST00000489573 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.34■□□□□ 0.373e-9■■■■■ 52.5
SMC4-221ENST00000489573 MYOD1P15172 320 aa17.34■□□□□ 0.37
SMC4-221ENST00000489573 HOXA1P49639 335 aaPredicted RBP17.34■□□□□ 0.37
SMC4-221ENST00000489573 COMMD5Q9GZQ3 224 aa17.34■□□□□ 0.37
SMC4-221ENST00000489573 SIGLEC9Q9Y336 463 aa17.34■□□□□ 0.37
SMC4-221ENST00000489573 A0A0U1RQK1 487 aa17.33■□□□□ 0.37
SMC4-221ENST00000489573 NBR2O15453 112 aa17.33■□□□□ 0.37
SMC4-221ENST00000489573 PRCDQ00LT1 54 aa17.33■□□□□ 0.37
SMC4-221ENST00000489573 BAXQ07812 192 aa17.33■□□□□ 0.37
SMC4-221ENST00000489573 SPANXN5Q5MJ07 72 aa17.33■□□□□ 0.37
SMC4-221ENST00000489573 THNSL2Q86YJ6 484 aa17.33■□□□□ 0.37
SMC4-221ENST00000489573 MMD2Q8IY49 270 aa17.33■□□□□ 0.37
SMC4-221ENST00000489573 CIARTQ8N365 385 aaPredicted RBP17.33■□□□□ 0.37
SMC4-221ENST00000489573 NPBQ8NG41 125 aa17.33■□□□□ 0.37
SMC4-221ENST00000489573 FBXL17Q9UF56 701 aa17.33■□□□□ 0.37
SMC4-221ENST00000489573 TEX50A0A1B0GTY4 177 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 RRHO14718 337 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 TAAR5O14804 337 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 FAM106CPP0CH98 169 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 TMEM11P17152 192 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 VDAC2P45880 294 aaPredicted RBP17.32■□□□□ 0.36
SMC4-221ENST00000489573 NHLH2Q02577 135 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 PRSS8Q16651 343 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 MRGPRG-AS1Q2M3A8 158 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 FBLN7Q53RD9 439 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 CLEC9AQ6UXN8 241 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 SLC51BQ86UW2 128 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 STX12Q86Y82 276 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 LURAP1LQ8IV03 231 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 Q8N6K4 173 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 OR1L8Q8NGR8 309 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 HINT2Q9BX68 163 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 HIPK2Q9H2X6 1198 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 FBXL15Q9H469 300 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 ENY2Q9NPA8 101 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 KIAA1456Q9P272 454 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 NDUFA3O95167 84 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 OPN1MWP04001 364 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 OPN1MW2P0DN77 364 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 OPN1MW3P0DN78 364 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 F2RL1P55085 397 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 TMEM267Q0VDI3 215 aaPredicted RBP17.32■□□□□ 0.36
SMC4-221ENST00000489573 PLGLAQ15195 96 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 FAM120AOSQ5T036 256 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 BSCL2Q96G97 398 aaPredicted RBP17.32■□□□□ 0.36
SMC4-221ENST00000489573 ZNF471Q9BX82 626 aaPredicted RBP17.32■□□□□ 0.36
SMC4-221ENST00000489573 MEGF9Q9H1U4 602 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 PLEKHA3Q9HB20 300 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 HEYLQ9NQ87 328 aaPredicted RBP17.32■□□□□ 0.36
SMC4-221ENST00000489573 FAM96BQ9Y3D0 163 aa17.32■□□□□ 0.36
SMC4-221ENST00000489573 SMAD7O15105 426 aaKnown RBP17.31■□□□□ 0.36
SMC4-221ENST00000489573 CST7O76096 145 aa17.31■□□□□ 0.36
SMC4-221ENST00000489573 MAS1LP35410 378 aa17.31■□□□□ 0.36
SMC4-221ENST00000489573 SULT1A1P50225 295 aa17.31■□□□□ 0.36
SMC4-221ENST00000489573 BPIFB3P59826 476 aa17.31■□□□□ 0.36
SMC4-221ENST00000489573 PJVKQ0ZLH3 352 aa17.31■□□□□ 0.36
SMC4-221ENST00000489573 PPP1R27Q86WC6 154 aa17.31■□□□□ 0.36
SMC4-221ENST00000489573 OR4C12Q96R67 309 aa17.31■□□□□ 0.36
SMC4-221ENST00000489573 SMIM3Q9BZL3 60 aa17.31■□□□□ 0.36
SMC4-221ENST00000489573 STRAPQ9Y3F4 350 aaKnown RBP17.31■□□□□ 0.36
SMC4-221ENST00000489573 DYNLT3P51808 116 aa17.3■□□□□ 0.36
SMC4-221ENST00000489573 UBA52P62987 128 aaKnown RBP17.3■□□□□ 0.36
SMC4-221ENST00000489573 TMEM14EPQ6UXP3 125 aa17.3■□□□□ 0.36
SMC4-221ENST00000489573 CYTL1Q9NRR1 136 aa17.3■□□□□ 0.36
SMC4-221ENST00000489573 ACTL6BO94805 426 aa17.29■□□□□ 0.36
SMC4-221ENST00000489573 FBP1P09467 338 aa17.29■□□□□ 0.36
SMC4-221ENST00000489573 METTL15P1P0C7V9 234 aa17.29■□□□□ 0.36
SMC4-221ENST00000489573 RPP30P78346 268 aaKnown RBP17.29■□□□□ 0.36
SMC4-221ENST00000489573 C10orf55Q5SWW7 151 aa17.29■□□□□ 0.36
SMC4-221ENST00000489573 OR8H1Q8NGG4 311 aa17.29■□□□□ 0.36
SMC4-221ENST00000489573 NDUFA4L2Q9NRX3 87 aa17.29■□□□□ 0.36
SMC4-221ENST00000489573 TET2Q6N021 2002 aaPredicted RBP17.28■□□□□ 0.36
SMC4-221ENST00000489573 FSHBP01225 129 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 TNXAQ16473 311 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 TMEM217Q8N7C4 229 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 PAIP2BQ9ULR5 123 aaKnown RBP17.28■□□□□ 0.36
SMC4-221ENST00000489573 A0A1W2PN81 502 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 RGS13O14921 159 aa17.28■□□□□ 0.36
SMC4-221ENST00000489573 CHRNA7P36544 502 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms