RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 HLA-GP17693 338 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 ELLP55199 621 aaPredicted RBP5.92□□□□□ -1.46
CD44-211ENST00000442151 C15orf32Q32M92 178 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 CMTM1Q8IZ96 169 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 SLC38A6Q8IZM9 456 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 SPAG16Q8N0X2 631 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 CADM3Q8N126 398 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 TSPAN14Q8NG11 270 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 NUDCD2Q8WVJ2 157 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 SECTM1Q8WVN6 248 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 CYYR1Q96J86 154 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 ATP6V0BQ99437 205 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 NEURL2Q9BR09 285 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 PLEKHA2Q9HB19 425 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 UFC1Q9Y3C8 167 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 DNAH3Q8TD57 4116 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 LOC100506127A0A0U1RQW1 187 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 XRCC3O43542 346 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 SNAPC5O75971 98 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 OR2J3O76001 311 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 PPYP01298 95 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 MYOD1P15172 320 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 ARL3P36405 182 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 TAS2R46P59540 309 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 CD81P60033 236 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 SSBP2P81877 361 aaPredicted RBP5.91□□□□□ -1.46
CD44-211ENST00000442151 POU2AF1Q16633 256 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 GUCA2BQ16661 112 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 KLK9Q2XQG4 91 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 DEFB114Q30KQ6 69 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 KCTD21Q4G0X4 260 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 ZNF57Q68EA5 555 aaPredicted RBP5.91□□□□□ -1.46
CD44-211ENST00000442151 LAMTOR1Q6IAA8 161 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 IL34Q6ZMJ4 242 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 IDO2Q6ZQW0 420 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 DMBX1Q8NFW5 382 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 OR5AP2Q8NGF4 316 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 LGALS14Q8TCE9 139 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 TAS2R8Q9NYW2 309 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 COMMD9Q9P000 198 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 KLK9Q9UKQ9 250 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 RYR3Q15413 4870 aa5.91□□□□□ -1.46
CD44-211ENST00000442151 IGKV1D-8A0A087WSZ0 117 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 ZNF320A2RRD8 509 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 BMPR1BO00238 502 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 TRAPPC2P0DI81 140 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 TRAPPC2BP0DI82 140 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 APELAP0DMC3 54 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 FOLR2P14207 255 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 CTRB1P17538 263 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 HAGHQ16775 308 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 OR2B11Q5JQS5 317 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 CTRB2Q6GPI1 263 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 RBPMS2Q6ZRY4 209 aaKnown RBP5.9□□□□□ -1.46
CD44-211ENST00000442151 OR13F1Q8NGS4 319 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 VN1R17PQ8TDU5 208 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 TMEM56Q96MV1 263 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 CMTM3Q96MX0 182 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 TSC22D3Q99576 134 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 AUNIPQ9H7T9 357 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 MRPL27Q9P0M9 148 aaKnown RBP5.9□□□□□ -1.46
CD44-211ENST00000442151 CEPT1Q9Y6K0 416 aa5.9□□□□□ -1.46
CD44-211ENST00000442151 C2orf70A6NJV1 201 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 OR11H12B2RN74 326 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 UPK2O00526 184 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 SSX5O60225 188 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 JTBO76095 146 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 OR2C1O95371 312 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 CBLN1P23435 193 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 RPL30P62888 115 aaKnown RBP5.9□□□□□ -1.47
CD44-211ENST00000442151 ZNF45Q02386 682 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 MXD1Q05195 221 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 EIF4EBP1Q13541 118 aaPredicted RBP5.9□□□□□ -1.47
CD44-211ENST00000442151 MRGPRG-AS1Q2M3A8 158 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 CD300EQ496F6 205 aaPredicted RBP5.9□□□□□ -1.47
CD44-211ENST00000442151 AADACL3Q5VUY0 350 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 SPSB3Q6PJ21 355 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 PLET1Q6UQ28 207 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 DHRS11Q6UWP2 260 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 OR1L8Q8NGR8 309 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 OR6F1Q8NGZ6 308 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 C5orf30Q96GV9 206 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 CCL28Q9NRJ3 127 aa5.9□□□□□ -1.47
CD44-211ENST00000442151 FAM212BQ9NTI7 297 aaPredicted RBP5.9□□□□□ -1.47
CD44-211ENST00000442151 DNAH9Q9NYC9 4486 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 A0A087WXM4 84 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 IGKV1D-13A0A0B4J2D9 117 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 SMIM30A4D0T7 59 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 HMX3A6NHT5 357 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 TEX22C9J3V5 150 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 ATG12O94817 140 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 IL6RP08887 468 aaPredicted RBP5.89□□□□□ -1.47
CD44-211ENST00000442151 IGKV1-13P0DP09 117 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 PTBP1P26599 531 aaKnown RBP eCLIP5.89□□□□□ -1.473e-6■■■■■ 30.2
CD44-211ENST00000442151 PRSS3P35030 304 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 BMI1P35226 326 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 FXYD4P59646 89 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 UBE2NLQ5JXB2 153 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 TMEM69Q5SWH9 247 aa5.89□□□□□ -1.47
CD44-211ENST00000442151 CLEC19AQ6UXS0 136 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms