RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RABL2AQ9UBK7 228 aaPredicted RBP11.7□□□□□ -0.54
LIMS3-201ENST00000437679 PEF1Q9UBV8 284 aaKnown RBP11.7□□□□□ -0.54
LIMS3-201ENST00000437679 RABL2BQ9UNT1 228 aa11.7□□□□□ -0.54
LIMS3-201ENST00000437679 NPIPB5A8MRT5 1133 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 GABARAPH6UMI1 98 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 SAP30O75446 220 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 DHFRP00374 187 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 CD3DP04234 171 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 RPA2P15927 270 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 ZNF45Q02386 682 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 DCTN2Q13561 401 aaKnown RBP11.69□□□□□ -0.54
LIMS3-201ENST00000437679 ARRDC1Q8N5I2 433 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 TMEM229BQ8NBD8 167 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 NECAP1Q8NC96 275 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 COMMD5Q9GZQ3 224 aa11.69□□□□□ -0.54
LIMS3-201ENST00000437679 C6orf62Q9GZU0 229 aaPredicted RBP11.69□□□□□ -0.54
LIMS3-201ENST00000437679 TRBV9A0A0B4J1U6 114 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 TRAV3A0A0B4J244 114 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 MARCH11A6NNE9 402 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 E7EUB6 86 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 RBMXL2O75526 392 aaKnown RBP11.68□□□□□ -0.54
LIMS3-201ENST00000437679 FGF2P09038 288 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 MYOD1P15172 320 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 PGAM2P15259 253 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 PSMB6P28072 239 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 TAS2R19P59542 299 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 SSBP1Q04837 148 aaKnown RBP11.68□□□□□ -0.54
LIMS3-201ENST00000437679 EXOSC2Q13868 293 aaKnown RBP11.68□□□□□ -0.54
LIMS3-201ENST00000437679 IL18Q14116 193 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 ACSM6Q6P461 480 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 TBC1D26Q86UD7 250 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 OR4C12Q96R67 309 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 ELOVL1Q9BW60 279 aa11.68□□□□□ -0.54
LIMS3-201ENST00000437679 A0A1B0GW64 132 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 CCDC160A6NGH7 325 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 OR2J3O76001 311 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 RAB3DO95716 219 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 KRASP01116 189 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 CRYGCP07315 174 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 AREGP15514 252 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 OR2B8PP59922 312 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 TATDN3Q17R31 274 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 ZNF585BQ52M93 769 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 STEAP1BQ6NZ63 245 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 PRR25Q96S07 402 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 SRSF8Q9BRL6 282 aaKnown RBP11.67□□□□□ -0.54
LIMS3-201ENST00000437679 FAM212BQ9NTI7 297 aaPredicted RBP11.67□□□□□ -0.54
LIMS3-201ENST00000437679 FBXL7Q9UJT9 491 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 ZNF256Q9Y2P7 627 aaPredicted RBP11.67□□□□□ -0.54
LIMS3-201ENST00000437679 CEPT1Q9Y6K0 416 aa11.67□□□□□ -0.54
LIMS3-201ENST00000437679 CTDSPLO15194 276 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 SNAPC5O75971 98 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 LY86O95711 162 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 TRBV12-3P01733 135 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 CD74P04233 296 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 DEFA4P12838 97 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 HIST1H1BP16401 226 aaKnown RBP11.66□□□□□ -0.54
LIMS3-201ENST00000437679 CTRB1P17538 263 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 G6PCP35575 357 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 KLF5Q13887 457 aaPredicted RBP11.66□□□□□ -0.54
LIMS3-201ENST00000437679 RPEL1Q2QD12 228 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 C15orf32Q32M92 178 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 FAM209BQ5JX69 171 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 CTRB2Q6GPI1 263 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 THOC7Q6I9Y2 204 aaKnown RBP11.66□□□□□ -0.54
LIMS3-201ENST00000437679 LHFPL1Q86WI0 220 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 CADM3Q8N126 398 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 OR6Q1Q8NGQ2 317 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 MCFD2Q8NI22 146 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 SMIM4Q8WVI0 70 aa11.66□□□□□ -0.54
LIMS3-201ENST00000437679 ZNF486Q96H40 463 aaPredicted RBP11.66□□□□□ -0.54
LIMS3-201ENST00000437679 QTRT1Q9BXR0 403 aaKnown RBP11.66□□□□□ -0.54
LIMS3-201ENST00000437679 SLIRPQ9GZT3 109 aaKnown RBP11.66□□□□□ -0.54
LIMS3-201ENST00000437679 CGB1A6NKQ9 187 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 REG1AP05451 166 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 TRAPPC2P0DI81 140 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 TRAPPC2BP0DI82 140 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 RND3P61587 244 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 MEF2DQ14814 521 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 SCGB2B2Q4G0G5 96 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 C19orf35Q6ZS72 473 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 OR4D10Q8NGI6 311 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 OR1L8Q8NGR8 309 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 TERB2Q8NHR7 220 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 ZFAND1Q8TCF1 268 aa11.65□□□□□ -0.54
LIMS3-201ENST00000437679 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.64□□□□□ -0.55
LIMS3-201ENST00000437679 IGLC7A0M8Q6 106 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 SERPINE2P07093 398 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 PTBP1P26599 531 aaKnown RBP eCLIP11.64□□□□□ -0.55
LIMS3-201ENST00000437679 PPP5CP53041 499 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 PIGPP57054 158 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 SYNJ2BPP57105 145 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 HSD17B13Q7Z5P4 300 aaPredicted RBP11.64□□□□□ -0.55
LIMS3-201ENST00000437679 OR9G4Q8NGQ1 327 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 FANCD2OSQ96PS1 177 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 TSC22D3Q99576 134 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 HINT2Q9BX68 163 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 FKBP11Q9NYL4 201 aa11.64□□□□□ -0.55
LIMS3-201ENST00000437679 RSL24D1Q9UHA3 163 aaKnown RBP11.64□□□□□ -0.55
LIMS3-201ENST00000437679 PRNDQ9UKY0 176 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms