RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TMEM202A6NGA9 273 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 ZNF708P17019 499 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 CA6P23280 308 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 CNTFRP26992 372 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 ZNF793Q6ZN11 406 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 SOCS1O15524 211 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 HOXA3O43365 443 aaPredicted RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 GPR6P46095 362 aaPredicted RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 DHCR7Q9UBM7 475 aaKnown RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 GDF9O60383 454 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 ATP5G1P05496 136 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 IL11P20809 199 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 ATP5G3P48201 142 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 ATP5G2Q06055 141 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 TNXAQ16473 311 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 ZNF362Q5T0B9 420 aaPredicted RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 SCGB3A1Q96QR1 104 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 NPCDR1Q9BY65 106 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 SF3B6Q9Y3B4 125 aaKnown RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 PSG2P11465 335 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 MNX1P50219 401 aaPredicted RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 VHLLQ6RSH7 139 aa6.18□□□□□ -1.42
VPS53-204ENST00000437048 TRMT61AQ96FX7 289 aaKnown RBP6.18□□□□□ -1.42
VPS53-204ENST00000437048 GCHFRP30047 84 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 A0A0G2JLM5 398 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 ACRP10323 421 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 FAM106AQ4KMX7 169 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 C9orf40Q8IXQ3 194 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 OR10W1Q8NGF6 305 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 SSMEM1Q8WWF3 244 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 H0YL77 283 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 TMEM187Q14656 261 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 RAX2Q96IS3 184 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 NKX2-8O15522 239 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 MPV17P39210 176 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 CITED2Q99967 270 aaPredicted RBP6.17□□□□□ -1.42
VPS53-204ENST00000437048 M0R2P5 195 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 ZNF585BQ52M93 769 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 RTN4RL2Q86UN3 420 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 FGFRL1Q8N441 504 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 C1orf162Q8NEQ5 155 aaPredicted RBP6.17□□□□□ -1.42
VPS53-204ENST00000437048 OR9G1Q8NH87 305 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 GDF15Q99988 308 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 TNFRSF12AQ9NP84 129 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 H3BMM0 161 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 CFPP27918 469 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 PYY3Q5JQD4 70 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 TMEM144Q7Z5S9 345 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 TMEFF1Q8IYR6 380 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 TSKUQ8WUA8 353 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 DDB2Q92466 427 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 GREB1Q4ZG55 1949 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 SPINK4O60575 86 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 TMEM258P61165 79 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 SMAD4Q13485 552 aaKnown RBP6.17□□□□□ -1.42
VPS53-204ENST00000437048 UTF1Q5T230 341 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 C1orf185Q5T7R7 199 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 MSL2Q9HCI7 577 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 HIST3H2BBQ8N257 126 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 GVQW1Q8N7I0 195 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 ZNF775Q96BV0 537 aaPredicted RBP6.17□□□□□ -1.42
VPS53-204ENST00000437048 LOXL4Q96JB6 756 aa6.17□□□□□ -1.42
VPS53-204ENST00000437048 TAL2Q16559 108 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 PVRIGQ6DKI7 326 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 RPRMLQ8N4K4 120 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 ADAD2Q8NCV1 583 aaKnown RBP6.16□□□□□ -1.42
VPS53-204ENST00000437048 SIVA1O15304 175 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 OTORQ9NRC9 128 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 PTPN13Q12923 2485 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 OTOGLQ3ZCN5 2332 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 TRBV20OR9-2A0A075B6H5 130 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 SIT1Q9Y3P8 196 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 PSG6Q00889 435 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 SHISA6Q6ZSJ9 500 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 KLF12Q9Y4X4 402 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 A0A1W2PNR3 127 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 NTN1O95631 604 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 ZDHHC16Q969W1 377 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 NABP2Q9BQ15 211 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 LINC00271P0C7V0 271 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 MYOD1P15172 320 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 TM4SF20Q53R12 229 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 TSPO2Q5TGU0 170 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 BCL6BQ8N143 479 aaPredicted RBP6.16□□□□□ -1.42
VPS53-204ENST00000437048 OR5AN1Q8NGI8 311 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 SLC25A38Q96DW6 304 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 SRSF8Q9BRL6 282 aaKnown RBP6.16□□□□□ -1.42
VPS53-204ENST00000437048 PEX7O00628 323 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 IGFBP3P17936 291 aaPredicted RBP6.16□□□□□ -1.42
VPS53-204ENST00000437048 DCAF12L2Q5VW00 463 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 FAM159AQ6UWV7 190 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 PRNTQ86SH4 94 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 ZNF721Q8TF20 911 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 C16orf92Q96LL3 132 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 PRR14LQ5THK1 2151 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 SMIM20Q8N5G0 67 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 KCNK17Q96T54 332 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 IFI27P40305 119 aaPredicted RBP6.16□□□□□ -1.42
VPS53-204ENST00000437048 C1orf210Q8IVY1 113 aa6.16□□□□□ -1.42
VPS53-204ENST00000437048 OR52M1Q8NGK5 317 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms