RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TLNRD1Q9H1K6 362 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 BEX4Q9NWD9 120 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 NDUFB4O95168 129 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 RNASE4P34096 147 aaKnown RBP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 AKIRIN1Q9H9L7 192 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 NPIPB4C9JG80 1138 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 HOXD3P31249 432 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 KCNS1Q96KK3 526 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 CD5P06127 495 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 OR11H4Q8NGC9 324 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 RNASE6Q93091 150 aaKnown RBP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF385AQ96PM9 386 aaKnown RBP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 PRADC1Q9BSG0 188 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 HDHD3Q9BSH5 251 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 IGHV3OR16-10A0A075B7F0 116 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 TRGV4A0A0C4DH28 118 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 LINC00305Q7Z4B0 112 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 HIST1H2BAQ96A08 127 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 FMC1Q96HJ9 113 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 TMEM30AQ9NV96 361 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 PTPRFP10586 1907 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 A0A0J9YW62 118 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 CXorf65A6NEN9 183 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 CD33P20138 364 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 MEF2BQ02080 365 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-204ENST00000423058 TMEM222Q9H0R3 208 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 A0A1B0GW15 77 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 ATP6V0CP27449 155 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 DEFB121Q5J5C9 76 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-204ENST00000423058 ALG14Q96F25 216 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 TMEM160Q9NX00 188 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 UQCR10Q9UDW1 63 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 LINC00587B1AMM8 73 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 NPIPB8E9PQR5 432 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 NPIPB9F8W1W9 429 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 NPIPB7O75200 414 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF883P0CG24 379 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 GPX4P36969 197 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-204ENST00000423058 CKS1BP61024 79 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 TNFRSF9Q07011 255 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 COLCA1Q6ZS62 124 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 ZPLD1Q8TCW7 415 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 SLIRPQ9GZT3 109 aaKnown RBP5.87□□□□□ -1.47
SCN1A-204ENST00000423058 ACACAQ13085 2346 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 HELZP42694 1942 aaKnown RBP5.87□□□□□ -1.47
SCN1A-204ENST00000423058 OR11H12B2RN74 326 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 IGKV1D-33P01593 117 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 IGKV1-33P01594 117 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 GOLT1AQ6ZVE7 132 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 OR11H1Q8NG94 326 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 OR11H2Q8NH07 326 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 LINC01560Q8TB33 94 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 CEACAM8P31997 349 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-204ENST00000423058 HBBP68871 147 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 Q6AWC8 147 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 WDR82Q6UXN9 313 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 FGFRL1Q8N441 504 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 MRPL18Q9H0U6 180 aaKnown RBP5.87□□□□□ -1.47
SCN1A-204ENST00000423058 PLSCR2Q9NRY7 297 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 TMEM106BQ9NUM4 274 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-204ENST00000423058 SLC25A38Q96DW6 304 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 DLL3Q9NYJ7 618 aa5.87□□□□□ -1.47
SCN1A-204ENST00000423058 MOSP00540 346 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 BSPH1Q075Z2 132 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF818PQ6ZRF7 136 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 FAM181AQ8N9Y4 354 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF414Q96IQ9 312 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 SCGB3A1Q96QR1 104 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 FLRT3Q9NZU0 649 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 M0R381 172 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 SPINK2P20155 84 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 INSL4Q14641 139 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 SLC25A34Q6PIV7 304 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 RNF182Q8N6D2 247 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 SAP25Q8TEE9 199 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 FBXL7Q9UJT9 491 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 TAF15Q92804 592 aaKnown RBP eCLIP5.86□□□□□ -1.47
SCN1A-204ENST00000423058 CBLN4Q9NTU7 201 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 SBF2Q86WG5 1849 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 IFI27P40305 119 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-204ENST00000423058 TDGF1P3P51864 188 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 KIAA0040Q15053 153 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 IGSF11Q5DX21 431 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 S100A7L2Q5SY68 101 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 TPRX1Q8N7U7 411 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 CNOT1A5YKK6 2376 aaKnown RBP5.86□□□□□ -1.47
SCN1A-204ENST00000423058 RRHO14718 337 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 SCTP09683 121 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 SPNP16150 400 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 FSTP19883 344 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 MGAT2Q10469 447 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF324BQ6AW86 544 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-204ENST00000423058 FAM71F2Q6NXP2 309 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 CYP2G1PQ6ZSU1 146 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 FDCSPQ8NFU4 85 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 HSPB9Q9BQS6 159 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 HRKO00198 91 aa5.86□□□□□ -1.47
SCN1A-204ENST00000423058 PEX11BO96011 259 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms