RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 TET2Q6N021 2002 aaPredicted RBP13.37□□□□□ -0.27
COL7A1-202ENST00000422991 A0A0B4J2A0 478 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 PIGBOS1A0A0B4J2F0 54 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 DUXBA0A1W2PPF3 345 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 ACTL6BO94805 426 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 IZUMO4Q1ZYL8 232 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 FAM219AQ8IW50 185 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 KLHDC1Q8N7A1 406 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 OR52B4Q8NGK2 314 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 SGMS2Q8NHU3 365 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 RNASE11Q8TAA1 199 aaKnown RBP13.37□□□□□ -0.27
COL7A1-202ENST00000422991 WIPF2Q8TF74 440 aaPredicted RBP13.37□□□□□ -0.27
COL7A1-202ENST00000422991 ABHD5Q8WTS1 349 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 SRSF12Q8WXF0 261 aaKnown RBP13.37□□□□□ -0.27
COL7A1-202ENST00000422991 LSM10Q969L4 123 aaKnown RBP13.37□□□□□ -0.27
COL7A1-202ENST00000422991 SEC22CQ9BRL7 303 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 FAM103A1Q9BTL3 118 aaKnown RBP13.37□□□□□ -0.27
COL7A1-202ENST00000422991 TMEM14BQ9NUH8 114 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 SHPKQ9UHJ6 478 aa13.37□□□□□ -0.27
COL7A1-202ENST00000422991 C15orf61A6NNL5 157 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 INMT-MINDY4F8WBC2 141 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 SNAPC5O75971 98 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 IL5P05113 134 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 MYOD1P15172 320 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 OR2B8PP59922 312 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 C19orf54Q5BKX5 351 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 LYZL2Q7Z4W2 148 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 CHPT1Q8WUD6 406 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 WFDC12Q8WWY7 111 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 PRNDQ9UKY0 176 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 FOXA2Q9Y261 457 aaPredicted RBP13.36□□□□□ -0.27
COL7A1-202ENST00000422991 NSG2Q9Y328 171 aa13.36□□□□□ -0.27
COL7A1-202ENST00000422991 TRAV41A0A0B4J266 112 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 A0A0B4J293 547 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 A0A1B0GW64 132 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 DBX1A6NMT0 343 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 VDAC1P21796 283 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 RPL27AP46776 148 aaKnown RBP13.35□□□□□ -0.27
COL7A1-202ENST00000422991 CFHR3Q02985 330 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 ECSCRQ19T08 205 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 RGS21Q2M5E4 152 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 NMSQ5H8A3 153 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 OR4A16Q8NH70 328 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 COQ8AQ8NI60 647 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 ZNF431Q8TF32 576 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-202ENST00000422991 MITD1Q8WV92 249 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 GPR146Q96CH1 333 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 COMMD5Q9GZQ3 224 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 WSB1Q9Y6I7 421 aa13.35□□□□□ -0.27
COL7A1-202ENST00000422991 TEX22C9J3V5 150 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 E7EUB6 86 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 G3V318 75 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 HAX1O00165 279 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 PRAF2O60831 178 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 C12orf54Q6X4T0 127 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 Q6ZRM9 215 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 LFNGQ8NES3 379 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 PHB2Q99623 299 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 SPIN2AQ99865 258 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 SPIN2BQ9BPZ2 258 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 GON7Q9BXV9 100 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 FKBP11Q9NYL4 201 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 OR51B2Q9Y5P1 312 aa13.34□□□□□ -0.27
COL7A1-202ENST00000422991 TEX50A0A1B0GTY4 177 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 PSMB11A5LHX3 300 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 MSGN1A6NI15 193 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 CGB1A6NKQ9 187 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 OPN1MWP04001 364 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 OPN1MW2P0DN77 364 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 OPN1MW3P0DN78 364 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 TMEM267Q0VDI3 215 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-202ENST00000422991 AARDQ4LEZ3 155 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 AKIRIN2Q53H80 203 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 ASPHD1Q5U4P2 390 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 UNQ5815/PRO19632Q6UWF5 114 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 C10orf99Q6UWK7 81 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 CENPVQ7Z7K6 275 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-202ENST00000422991 ZNF429Q86V71 674 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 MINDY2Q8NBR6 621 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 OR1L8Q8NGR8 309 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 OR5B3Q8NH48 314 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 QTRT1Q9BXR0 403 aaKnown RBP13.33□□□□□ -0.28
COL7A1-202ENST00000422991 CACNG5Q9UF02 275 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 ZNF257Q9Y2Q1 563 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 TMED3Q9Y3Q3 217 aa13.33□□□□□ -0.28
COL7A1-202ENST00000422991 RBMXL2O75526 392 aaKnown RBP13.32□□□□□ -0.28
COL7A1-202ENST00000422991 DHFRP00374 187 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 HOXB5P09067 269 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 SULT1A3P0DMM9 295 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 SULT1A4P0DMN0 295 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 PPIFP30405 207 aaKnown RBP13.32□□□□□ -0.28
COL7A1-202ENST00000422991 KRTAP10-3P60369 221 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 SLC35B1P78383 322 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 ZNF329Q86UD4 541 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 TMEM68Q96MH6 324 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 FYTTD1Q96QD9 318 aaKnown RBP13.32□□□□□ -0.28
COL7A1-202ENST00000422991 GPN1Q9HCN4 374 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-202ENST00000422991 NDUFA4L2Q9NRX3 87 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 COA4Q9NYJ1 87 aa13.32□□□□□ -0.28
COL7A1-202ENST00000422991 HMX3A6NHT5 357 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms