RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ZNF257Q9Y2Q1 563 aa9.12□□□□□ -0.95
LIMS1-207ENST00000422797 SRRM5B3KS81 715 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 ISLRO14498 428 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 RRHO14718 337 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 SERF1AO75920 110 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 SPINK2P20155 84 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 CX3CL1P78423 397 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 PRR20EP86478 221 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 PRR20CP86479 221 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 PRR20DP86480 221 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 PRR20BP86481 221 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 PRR20AP86496 221 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 ALKBH6Q3KRA9 238 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 SPINK9Q5DT21 86 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 ZNF705AQ6ZN79 300 aaPredicted RBP9.11□□□□□ -0.95
LIMS1-207ENST00000422797 Q6ZWC4 215 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 LRRC29Q8WV35 223 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 DDB2Q92466 427 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 NEUROG1Q92886 237 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 HSPB9Q9BQS6 159 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 LRFN3Q9BTN0 628 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 COMMD5Q9GZQ3 224 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 TMEM14BQ9NUH8 114 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 SPRR3Q9UBC9 169 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 YTHDF2Q9Y5A9 579 aaKnown RBP9.11□□□□□ -0.95
LIMS1-207ENST00000422797 SDK2Q58EX2 2172 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 ARHGAP21Q5T5U3 1957 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 DNAH14Q0VDD8 3507 aa9.11□□□□□ -0.95
LIMS1-207ENST00000422797 IGHG3P01860 377 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 EGR1P18146 543 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 CBLN1P23435 193 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 GUSBP1Q15486 140 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 HLA-DRB5Q30154 266 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 CHRDL1Q9BU40 450 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 MRPL32Q9BYC8 188 aaKnown RBP9.1□□□□□ -0.95
LIMS1-207ENST00000422797 IFI27L2Q9H2X8 130 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 V9GYV3 84 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 IGHV3-43A0A0B4J1X8 118 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 A0A1W2PRE2 83 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 LNP1A1A4G5 178 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 HELTA6NFD8 242 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 SNURFLB1AK76 121 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 C3orf80F5H4A9 247 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 AQP7O14520 342 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 DLEU1O43261 78 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 IGLV1-44P01699 117 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 AMY1AP04745 511 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 IGHV3-43DP0DP04 118 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 RPS16P62249 146 aaKnown RBP9.1□□□□□ -0.95
LIMS1-207ENST00000422797 ARG2P78540 354 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 COL5A1-AS1Q5SY13 56 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 Q6ZR03 302 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 C19orf35Q6ZS72 473 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 ZNF826PQ6ZT77 177 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 TCF23Q7RTU1 214 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 KLHDC1Q8N7A1 406 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 KCNS1Q96KK3 526 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 DEFB127Q9H1M4 99 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 FOXJ2Q9P0K8 574 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 TP53TG3Q9ULZ0 132 aa9.1□□□□□ -0.95
LIMS1-207ENST00000422797 MUC6Q6W4X9 2439 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 C20orf202A1L168 122 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 K7EN84 100 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 DEFA4P12838 97 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 ZNF25P17030 456 aaPredicted RBP9.09□□□□□ -0.95
LIMS1-207ENST00000422797 IER3P46695 156 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 PRSS8Q16651 343 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 ARSJQ5FYB0 599 aaPredicted RBP9.09□□□□□ -0.95
LIMS1-207ENST00000422797 FAM162BQ5T6X4 162 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 LRP11Q86VZ4 500 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 CD177Q8N6Q3 437 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 OR4P4Q8NGL7 312 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 RFESDQ8TAC1 157 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 AURKAIP1Q9NWT8 199 aaPredicted RBP9.09□□□□□ -0.95
LIMS1-207ENST00000422797 CALYQ9NYX4 217 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 MRPL27Q9P0M9 148 aaKnown RBP9.09□□□□□ -0.95
LIMS1-207ENST00000422797 GOLT1BQ9Y3E0 138 aa9.09□□□□□ -0.95
LIMS1-207ENST00000422797 GRIFINA4D1Z8 144 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 PGPEP1LA6NFU8 196 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 DEFB108AA8MXU0 73 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 NUPR1O60356 82 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 ZNF253O75346 499 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 LYZL6O75951 148 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 GPX1P07203 203 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 BTF3P20290 206 aaKnown RBP9.08□□□□□ -0.96
LIMS1-207ENST00000422797 LOXL3P58215 753 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 LINC00310P59036 64 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 RELQ04864 619 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-207ENST00000422797 EDDM3AQ14507 147 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 CENPWQ5EE01 88 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 KIAA2026Q5HYC2 2103 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 CYB5R2Q6BCY4 276 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 CXorf67Q86X51 503 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-207ENST00000422797 Q8TCH9 128 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 WIPF2Q8TF74 440 aaPredicted RBP9.08□□□□□ -0.96
LIMS1-207ENST00000422797 SSMEM1Q8WWF3 244 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 PLEKHA3Q9HB20 300 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 UQCR10Q9UDW1 63 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 NAT8BQ9UHF3 227 aa9.08□□□□□ -0.96
LIMS1-207ENST00000422797 DIRC3C9JPN6 131 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms