RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 PDLIM3Q53GG5 364 aaPredicted RBP16.05■□□□□ 0.16
VSX1-204ENST00000409958 ZFAND1Q8TCF1 268 aa16.05■□□□□ 0.16
VSX1-204ENST00000409958 FYTTD1Q96QD9 318 aaKnown RBP16.05■□□□□ 0.16
VSX1-204ENST00000409958 TRAV3A0A0B4J244 114 aa16.04■□□□□ 0.16
VSX1-204ENST00000409958 A0A1B0GW64 132 aa16.04■□□□□ 0.16
VSX1-204ENST00000409958 ANKRD20A5PA0PJZ0 165 aa16.04■□□□□ 0.16
VSX1-204ENST00000409958 HMX3A6NHT5 357 aa16.04■□□□□ 0.16
VSX1-204ENST00000409958 DISC1C4P0D8 188 aa16.04■□□□□ 0.16
VSX1-204ENST00000409958 LINC01619G3V211 115 aa16.04■□□□□ 0.16
VSX1-204ENST00000409958 PRB2P02812 416 aaPredicted RBP16.04■□□□□ 0.16
VSX1-204ENST00000409958 HSPB1P04792 205 aaKnown RBP16.04■□□□□ 0.16
VSX1-204ENST00000409958 PTBP1P26599 531 aaKnown RBP eCLIP16.04■□□□□ 0.16
VSX1-204ENST00000409958 PPP5CP53041 499 aa16.04■□□□□ 0.16
VSX1-204ENST00000409958 USMG5Q96IX5 58 aa16.04■□□□□ 0.16
VSX1-204ENST00000409958 NPIPB5A8MRT5 1133 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 KRASP01116 189 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 MYOD1P15172 320 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 RPA2P15927 270 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 ECI1P42126 302 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 PIGPP57054 158 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 FAAP20Q6NZ36 180 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 REC114Q7Z4M0 266 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 OR4C16Q8NGL9 310 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 COMMD5Q9GZQ3 224 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 NDUFA13Q9P0J0 144 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 ZNF257Q9Y2Q1 563 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 DNAH3Q8TD57 4116 aa16.03■□□□□ 0.16
VSX1-204ENST00000409958 IGHV4OR15-8A0A075B7B6 117 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 A0A087WW49 117 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 TRBV9A0A0B4J1U6 114 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 DPPA5A6NC42 116 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 PI3P19957 117 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 G6PCP35575 357 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 OR2B8PP59922 312 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 OR13C8Q8NGS7 320 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 MRGPRFQ96AM1 343 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 THAP7Q9BT49 309 aaPredicted RBP16.02■□□□□ 0.16
VSX1-204ENST00000409958 V9GYH0 126 aa16.02■□□□□ 0.16
VSX1-204ENST00000409958 CGB1A6NKQ9 187 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 FAM223BA6NKX1 122 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 CRYGCP07315 174 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 CTSDP07339 412 aaPredicted RBP16.01■□□□□ 0.15
VSX1-204ENST00000409958 ZNF45Q02386 682 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 EGFEM1PQ0D2K5 195 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 CCDC190Q86UF4 302 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 FAM223AQ8IWN6 122 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 CCDC71LQ8N9Z2 235 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 MARCH1Q8TCQ1 289 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 PRRT1Q99946 306 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 SRSF8Q9BRL6 282 aaKnown RBP16.01■□□□□ 0.15
VSX1-204ENST00000409958 RANGRFQ9HD47 186 aaPredicted RBP16.01■□□□□ 0.15
VSX1-204ENST00000409958 COPZ2Q9P299 210 aa16.01■□□□□ 0.15
VSX1-204ENST00000409958 H0Y980 276 aa16■□□□□ 0.15
VSX1-204ENST00000409958 RBMXL2O75526 392 aaKnown RBP16■□□□□ 0.15
VSX1-204ENST00000409958 PRH1P02810 166 aa16■□□□□ 0.15
VSX1-204ENST00000409958 SERPINE2P07093 398 aa16■□□□□ 0.15
VSX1-204ENST00000409958 AREGP15514 252 aa16■□□□□ 0.15
VSX1-204ENST00000409958 PSMB6P28072 239 aa16■□□□□ 0.15
VSX1-204ENST00000409958 SLURP1P55000 103 aa16■□□□□ 0.15
VSX1-204ENST00000409958 RHOGP84095 191 aa16■□□□□ 0.15
VSX1-204ENST00000409958 DEFA5Q01523 94 aa16■□□□□ 0.15
VSX1-204ENST00000409958 SURF2Q15527 256 aaPredicted RBP16■□□□□ 0.15
VSX1-204ENST00000409958 PYDC2Q56P42 97 aa16■□□□□ 0.15
VSX1-204ENST00000409958 C9orf66Q5T8R8 295 aa16■□□□□ 0.15
VSX1-204ENST00000409958 THOC7Q6I9Y2 204 aaKnown RBP16■□□□□ 0.15
VSX1-204ENST00000409958 ZNF343Q6P1L6 599 aa16■□□□□ 0.15
VSX1-204ENST00000409958 DCUN1D4Q92564 292 aa16■□□□□ 0.15
VSX1-204ENST00000409958 AKIP1Q9NQ31 210 aa16■□□□□ 0.15
VSX1-204ENST00000409958 SLC2A8Q9NY64 477 aa16■□□□□ 0.15
VSX1-204ENST00000409958 SEC14L6B5MCN3 397 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 OVOL1O14753 267 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 SNAPC5O75971 98 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 DHFRP00374 187 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 IGKV1-39P01597 117 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 IGKV1D-39P04432 117 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 CTRB1P17538 263 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 HOXD3P31249 432 aaPredicted RBP15.99■□□□□ 0.15
VSX1-204ENST00000409958 ETV6P41212 452 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 ZNF79Q15937 498 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 CTRB2Q6GPI1 263 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 Q8N402 240 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 NECAP1Q8NC96 275 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 OR51S1Q8NGJ8 323 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 DLX4Q92988 240 aaPredicted RBP15.99■□□□□ 0.15
VSX1-204ENST00000409958 SEC22AQ96IW7 307 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 TSC22D3Q99576 134 aa15.99■□□□□ 0.15
VSX1-204ENST00000409958 QTRT1Q9BXR0 403 aaKnown RBP15.99■□□□□ 0.15
VSX1-204ENST00000409958 C3orf85A0A1B0GTC6 90 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 ZP3P21754 424 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 KRTAP10-11P60412 298 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 ATP5G2Q06055 141 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 KLK9Q2XQG4 91 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 OR1L8Q8NGR8 309 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 TRIM63Q969Q1 353 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 TP53RKQ96S44 253 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 AURKAIP1Q9NWT8 199 aaPredicted RBP15.98■□□□□ 0.15
VSX1-204ENST00000409958 PEF1Q9UBV8 284 aaKnown RBP15.98■□□□□ 0.15
VSX1-204ENST00000409958 SCP2D1Q9UJQ7 156 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 KLK9Q9UKQ9 250 aa15.98■□□□□ 0.15
VSX1-204ENST00000409958 PRNDQ9UKY0 176 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms