RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SH3BGRL3Q9H299 93 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 PLEKHA3Q9HB20 300 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 IGHV4-39P01824 125 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 OR5G3P0C626 314 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 ERHP84090 104 aaKnown RBP8.53□□□□□ -1.04
COL6A3-205ENST00000392004 GAMTQ14353 236 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 FOXL2NBQ6ZUU3 175 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 GALNT14Q96FL9 552 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 C14orf144Q96I85 54 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 FBXL15Q9H469 300 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 ANAPC10Q9UM13 185 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 TACC2O95359 2948 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 FLNAP21333 2647 aaKnown RBP8.53□□□□□ -1.04
COL6A3-205ENST00000392004 PTPRBP23467 1997 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 IGKV1D-33P01593 117 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 IGKV1-33P01594 117 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 OPRK1P41145 380 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 CD200P41217 278 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 DLK1P80370 383 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 COLCA1Q6ZS62 124 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 MOB3AQ96BX8 217 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 RCL1Q9Y2P8 373 aaKnown RBP8.53□□□□□ -1.04
COL6A3-205ENST00000392004 NUP210LQ5VU65 1888 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 B4DSR2 109 aa8.52□□□□□ -1.04
COL6A3-205ENST00000392004 CA11O75493 328 aa8.52□□□□□ -1.04
COL6A3-205ENST00000392004 DTYMKP23919 212 aa8.52□□□□□ -1.04
COL6A3-205ENST00000392004 NCR3LG1Q68D85 454 aa8.52□□□□□ -1.04
COL6A3-205ENST00000392004 TMEM200BQ69YZ2 307 aa8.52□□□□□ -1.04
COL6A3-205ENST00000392004 MRPL41Q8IXM3 137 aaKnown RBP8.52□□□□□ -1.04
COL6A3-205ENST00000392004 DPF1Q92782 380 aa8.52□□□□□ -1.04
COL6A3-205ENST00000392004 BSCL2Q96G97 398 aaPredicted RBP8.52□□□□□ -1.04
COL6A3-205ENST00000392004 Q9N2K0 584 aa8.52□□□□□ -1.04
COL6A3-205ENST00000392004 DYSFO75923 2080 aa8.52□□□□□ -1.04
COL6A3-205ENST00000392004 CLEC18AA5D8T8 446 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 TGOLN2O43493 480 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 Q56UQ5 140 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 ZNF343Q6P1L6 599 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 THNSL2Q86YJ6 484 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 CLEC18CQ8NCF0 446 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 OR4S2Q8NH73 311 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 SPSB4Q96A44 273 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 BEX4Q9NWD9 120 aaPredicted RBP8.52□□□□□ -1.05
COL6A3-205ENST00000392004 RPUSD1Q9UJJ7 312 aaKnown RBP8.52□□□□□ -1.05
COL6A3-205ENST00000392004 CRYM-AS1A6NIL9 109 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 PHOX2AO14813 284 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 TRGC2P03986 189 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 METTL15P1P0C7V9 234 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 CCL1P22362 96 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 TAS2R60P59551 318 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 NHLH2Q02577 135 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 RAB31Q13636 194 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 ANKRD39Q53RE8 183 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 TRAT1Q6PIZ9 186 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 PCSK4Q6UW60 755 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 WFDC11Q8NEX6 87 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 NTNG2Q96CW9 530 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 SLC25A31Q9H0C2 315 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 NAA60Q9H7X0 242 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 DPM3Q9P2X0 92 aa8.52□□□□□ -1.05
COL6A3-205ENST00000392004 IGHV3OR16-13A0A075B7E8 117 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 IGHV3-74A0A0B4J1X5 117 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 KBTBD11-OT1A0A1B0GTJ5 212 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HMGB3O15347 200 aaKnown RBP8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HBE1P02100 147 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 TMEM267Q0VDI3 215 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-205ENST00000392004 CR1LQ2VPA4 569 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 FAM210BQ96KR6 192 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 PATZ1Q9HBE1 687 aaKnown RBP8.51□□□□□ -1.05
COL6A3-205ENST00000392004 WFDC1Q9HC57 220 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 TGIF2-C20orf24A0A0A6YYL0 155 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 MBP02144 154 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 KHDC3LQ587J8 217 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 DRAM1Q8N682 238 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 Q8WTZ3 238 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 ARV1Q9H2C2 271 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 FAM106CPP0CH98 169 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 MAS1LP35410 378 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 CENPVQ7Z7K6 275 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-205ENST00000392004 PACRGQ96M98 296 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-205ENST00000392004 WDFY3Q8IZQ1 3526 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 A0A087WWC5 75 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST1H2BKO60814 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST1H2BJP06899 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST1H2BOP23527 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST1H2BBP33778 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST1H2BDP58876 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 RAB4BP61018 213 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 RAB11AP62491 216 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST1H2BCP62807 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST2H2BEQ16778 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-205ENST00000392004 CCDC144NLQ6NUI1 221 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 ACSM6Q6P461 480 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 VMO1Q7Z5L0 202 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST1H2BHQ93079 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST1H2BNQ99877 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 HIST1H2BMQ99879 126 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 C1RLQ9NZP8 487 aa8.51□□□□□ -1.05
COL6A3-205ENST00000392004 NBEAQ8NFP9 2946 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 A0A1B0GW64 132 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms