RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 GGACTQ9BVM4 153 aa11.53□□□□□ -0.56
LDB3-204ENST00000372066 RPRMQ9NS64 109 aa11.53□□□□□ -0.56
LDB3-204ENST00000372066 SLC25A10Q9UBX3 287 aaPredicted RBP11.53□□□□□ -0.56
LDB3-204ENST00000372066 PPIAL4AQ9Y536 164 aa11.53□□□□□ -0.56
LDB3-204ENST00000372066 OVOL3O00110 214 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 SLC31A2O15432 143 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 IFNA17P01571 189 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 SOD3P08294 240 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 TAGLN2P37802 199 aaKnown RBP11.52□□□□□ -0.57
LDB3-204ENST00000372066 KRTAP1-1Q07627 177 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 TMEM88Q6PEY1 159 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 CBLN2Q8IUK8 224 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 C15orf54Q8N8G6 183 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 NEUROG1Q92886 237 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 ZDHHC16Q969W1 377 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 QTRT1Q9BXR0 403 aaKnown RBP11.52□□□□□ -0.57
LDB3-204ENST00000372066 DYNLRB1Q9NP97 96 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 TMEM106BQ9NUM4 274 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 TMEM140Q9NV12 185 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 KAAG1Q9UBP8 84 aa11.52□□□□□ -0.57
LDB3-204ENST00000372066 ZANQ9Y493 2812 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 LOC102723971A0A1B0GUV8 181 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 MEX3AA1L020 520 aaKnown RBP11.51□□□□□ -0.57
LDB3-204ENST00000372066 B9A039 149 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 TMPRSS2O15393 492 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 MPDU1O75352 247 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 SRP19P09132 144 aaKnown RBP11.51□□□□□ -0.57
LDB3-204ENST00000372066 NDUFB7P17568 137 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 APOBEC3AP31941 199 aaPredicted RBP11.51□□□□□ -0.57
LDB3-204ENST00000372066 CDKN1AP38936 164 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 CCL20P78556 96 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 RELBQ01201 579 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 ICAM4Q14773 271 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 AWAT1Q58HT5 328 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 FAM71F2Q6NXP2 309 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 IQCF2Q8IXL9 164 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 ZNF709Q8N972 641 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 C8orf31Q8N9H6 132 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 RCC1LQ96I51 464 aaKnown RBP11.51□□□□□ -0.57
LDB3-204ENST00000372066 P2RX4Q99571 388 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 CISD1Q9NZ45 108 aaKnown RBP11.51□□□□□ -0.57
LDB3-204ENST00000372066 FOXA2Q9Y261 457 aaPredicted RBP11.51□□□□□ -0.57
LDB3-204ENST00000372066 FBN3Q75N90 2809 aa11.51□□□□□ -0.57
LDB3-204ENST00000372066 C15orf61A6NNL5 157 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 C15orf62A8K5M9 175 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 MDKP21741 143 aaPredicted RBP11.5□□□□□ -0.57
LDB3-204ENST00000372066 FGF7P21781 194 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 NFYBP25208 207 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 RTL8BQ17RB0 113 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 ZNF672Q499Z4 452 aaPredicted RBP11.5□□□□□ -0.57
LDB3-204ENST00000372066 LRRC10Q5BKY1 277 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 DUX4L9Q6RFH8 374 aaPredicted RBP11.5□□□□□ -0.57
LDB3-204ENST00000372066 HEPN1Q6WQI6 88 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 LYG1Q8N1E2 194 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 DOCK11Q5JSL3 2073 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 CTXND1A0A1B0GTU2 59 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 A0A1B0GV50 99 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 E7EQL1 145 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 M0R036 132 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 TNFRSF13BO14836 293 aaPredicted RBP11.5□□□□□ -0.57
LDB3-204ENST00000372066 NDUFB3O43676 98 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 FSTL3O95633 263 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 BCL2P10415 239 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 VDAC2P45880 294 aaPredicted RBP11.5□□□□□ -0.57
LDB3-204ENST00000372066 RAB11AP62491 216 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 RPL31P62899 125 aaKnown RBP11.5□□□□□ -0.57
LDB3-204ENST00000372066 DLK1P80370 383 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 HAGHQ16775 308 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 ZNF714Q96N38 554 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 RARRES2Q99969 163 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 RPS10P5Q9NQ39 176 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 YAE1D1Q9NRH1 226 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 KCNIP2Q9NS61 270 aa11.5□□□□□ -0.57
LDB3-204ENST00000372066 TET2Q6N021 2002 aaPredicted RBP11.49□□□□□ -0.57
LDB3-204ENST00000372066 ANK3Q12955 4377 aaKnown RBP11.49□□□□□ -0.57
LDB3-204ENST00000372066 C7orf77A4D0Y5 90 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 MAP1LC3B2A6NCE7 125 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 OR13C7P0DN81 318 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 FOLR2P14207 255 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 ATP5IP56385 69 aaPredicted RBP11.49□□□□□ -0.57
LDB3-204ENST00000372066 LINC00205P59089 165 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 OR2B8PP59922 312 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 ZNF383Q8NA42 475 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 RHOVQ96L33 236 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 NPCDR1Q9BY65 106 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 MAP1LC3BQ9GZQ8 125 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 HEYLQ9NQ87 328 aaPredicted RBP11.49□□□□□ -0.57
LDB3-204ENST00000372066 TMEM14BQ9NUH8 114 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 SLC39A9Q9NUM3 307 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 PRNDQ9UKY0 176 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 TCF19Q9Y242 345 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 WDR83OSQ9Y284 106 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 ZNF257Q9Y2Q1 563 aa11.49□□□□□ -0.57
LDB3-204ENST00000372066 YLPM1P49750 1951 aaKnown RBP11.49□□□□□ -0.57
LDB3-204ENST00000372066 COL6A5A8TX70 2615 aa11.48□□□□□ -0.57
LDB3-204ENST00000372066 NDUFS7O75251 213 aa11.48□□□□□ -0.57
LDB3-204ENST00000372066 IGHV4-39P01824 125 aa11.48□□□□□ -0.57
LDB3-204ENST00000372066 ZNF726P1Q15940 193 aa11.48□□□□□ -0.57
LDB3-204ENST00000372066 ACOT6Q3I5F7 207 aaPredicted RBP11.48□□□□□ -0.57
LDB3-204ENST00000372066 AVPI1Q5T686 147 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms