RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 ORMDL2Q53FV1 153 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 PCSK4Q6UW60 755 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 PRR7Q8TB68 274 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 SSBP3Q9BWW4 388 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-203ENST00000360280 SEMA5BQ9P283 1151 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 LHX9Q9NQ69 397 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 LINC01549A6NIU2 74 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 LEPP41159 167 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 RSPO2Q6UXX9 243 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-203ENST00000360280 NAPSAO96009 420 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 PF4P02776 101 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 CT62P0C5K7 136 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 HSPE1P61604 102 aaKnown RBP7.98□□□□□ -1.13
VPS13A-203ENST00000360280 SAXO1Q8IYX7 474 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 EDIL3O43854 480 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 LHX8Q68G74 356 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 MRPL20Q9BYC9 149 aaKnown RBP7.98□□□□□ -1.13
VPS13A-203ENST00000360280 LRP5O75197 1615 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 FOXA3P55318 350 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-203ENST00000360280 ST6GALNAC3Q8NDV1 305 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 CLEC7AQ9BXN2 247 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 NPDC1Q9NQX5 325 aaPredicted RBP7.98□□□□□ -1.13
VPS13A-203ENST00000360280 CACNA1IQ9P0X4 2223 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 DPM2O94777 84 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 BGLAPP02818 100 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 RIPPLY3P57055 190 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 CT55Q8WUE5 264 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 SAMD5Q5TGI4 173 aa7.98□□□□□ -1.13
VPS13A-203ENST00000360280 CD8AP01732 235 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 TMEM42Q69YG0 159 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 DCTN5Q9BTE1 182 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 NR2C2APQ86WQ0 139 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 TMEM74BQ9NUR3 256 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 MRPS18AQ9NVS2 196 aaKnown RBP7.97□□□□□ -1.13
VPS13A-203ENST00000360280 TMEM238C9JI98 176 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 DUX3Q96PT4 197 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 RPP21Q9H633 154 aaKnown RBP7.97□□□□□ -1.13
VPS13A-203ENST00000360280 CARHSP1Q9Y2V2 147 aaKnown RBP7.97□□□□□ -1.13
VPS13A-203ENST00000360280 PMS2CLQ68D20 193 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 CST9LQ9H4G1 147 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 INTS1Q8N201 2190 aaKnown RBP7.97□□□□□ -1.13
VPS13A-203ENST00000360280 UCP2P55851 309 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 ADRA2AP08913 450 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 SNAI3Q3KNW1 292 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 POC1AQ8NBT0 407 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 FAM57AQ8TBR7 257 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 PAPPAQ13219 1627 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 C1orf185Q5T7R7 199 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 NPCDR1Q9BY65 106 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 COX11Q9Y6N1 276 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 TRAV8-1A0A0A6YYK1 113 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 ZG16O60844 167 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 LHFPL4Q7Z7J7 247 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 PPP1R3EQ9H7J1 279 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 PTPRZ1P23471 2315 aaPredicted RBP7.97□□□□□ -1.13
VPS13A-203ENST00000360280 PLXND1Q9Y4D7 1925 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 HLA-DQB1P01920 261 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 HBDP02042 147 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 HIST1H4AP62805 103 aaKnown RBP7.97□□□□□ -1.13
VPS13A-203ENST00000360280 ERVH48-1M5A8F1 160 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 TMEM186Q96B77 213 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 DENND4AQ7Z401 1863 aa7.97□□□□□ -1.13
VPS13A-203ENST00000360280 DOCK4Q8N1I0 1966 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 M0R2P5 195 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 SNAI2O43623 268 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 COX14Q96I36 57 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 C5orf66Q9H5L9 145 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 SCTP09683 121 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 DEFB123Q8N688 67 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 OR4D11Q8NGI4 311 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 NDUFAF3Q9BU61 184 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 NANOS3P60323 173 aaKnown RBP7.96□□□□□ -1.13
VPS13A-203ENST00000360280 ERVK11-1P61568 191 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 CXorf66Q5JRM2 361 aaPredicted RBP7.96□□□□□ -1.13
VPS13A-203ENST00000360280 GCHFRP30047 84 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 EFNB1P98172 346 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 SRSF1Q07955 248 aaKnown RBP eCLIP7.96□□□□□ -1.13
VPS13A-203ENST00000360280 FUT5Q11128 374 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 TMEM131Q92545 1883 aa7.96□□□□□ -1.13
VPS13A-203ENST00000360280 REG1AP05451 166 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 P2RY4P51582 365 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 CCL8P80075 99 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 HSD52Q0P140 79 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 CXCL16Q9H2A7 254 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 IDI2-AS1Q9NZ38 188 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 CYP2G1PQ6ZSU1 146 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 DOCK10Q96BY6 2186 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 SAA1P0DJI8 122 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-203ENST00000360280 ZP4Q12836 540 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 HIGD1CA8MV81 97 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 JPT1Q9UK76 154 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 IZUMO1RA6ND01 250 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 PGLYRP1O75594 196 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-203ENST00000360280 DTX2Q86UW9 622 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 FER1L6-AS1Q8NA97 138 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 GDF15Q99988 308 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 ZNF71Q9NQZ8 489 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-203ENST00000360280 SPINT1O43278 529 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 OR11H4Q8NGC9 324 aa7.96□□□□□ -1.14
VPS13A-203ENST00000360280 ABCA1O95477 2261 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms