RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MRPL20Q9BYC9 149 aaKnown RBP6.93□□□□□ -1.3
HMGB1-203ENST00000341423 ZNF430Q9H8G1 570 aaPredicted RBP6.93□□□□□ -1.3
HMGB1-203ENST00000341423 TNFRSF12AQ9NP84 129 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 WNK3Q9BYP7 1800 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 E5RGE8 158 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 BOLA2-SMG1P6H3BVE0 249 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 PRB2P02812 416 aaPredicted RBP6.93□□□□□ -1.3
HMGB1-203ENST00000341423 ZNF250P15622 560 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 CCR6P51684 374 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 HNRNPA3P51991 378 aaKnown RBP6.93□□□□□ -1.3
HMGB1-203ENST00000341423 UBE2BP63146 152 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 ODF3L1Q8IXM7 274 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 CTHRC1Q96CG8 243 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 NDUFB11Q9NX14 153 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 NSG2Q9Y328 171 aa6.93□□□□□ -1.3
HMGB1-203ENST00000341423 IGHV3OR16-8A0A075B7F1 116 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 H0YL77 283 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 HIST1H1DP16402 221 aaKnown RBP6.92□□□□□ -1.3
HMGB1-203ENST00000341423 NKX2-5P52952 324 aaPredicted RBP6.92□□□□□ -1.3
HMGB1-203ENST00000341423 PAPPA-AS1Q5QFB9 102 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 HEPN1Q6WQI6 88 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 ZNF485Q8NCK3 441 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 C2orf50Q96LR7 162 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 MED9Q9NWA0 146 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 XCL2Q9UBD3 114 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 NPIPB13A6NJU9 1138 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 NPIPB4C9JG80 1138 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 SLC17A2O00624 439 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 SUMO2P61956 95 aaKnown RBP6.92□□□□□ -1.3
HMGB1-203ENST00000341423 PIGYQ3MUY2 71 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 TMEM42Q69YG0 159 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 CGB2Q6NT52 195 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 C10orf111Q8N326 155 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 ANKRD60Q9BZ19 345 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 RCL1Q9Y2P8 373 aaKnown RBP6.92□□□□□ -1.3
HMGB1-203ENST00000341423 ZFC3H1O60293 1989 aaKnown RBP6.92□□□□□ -1.3
HMGB1-203ENST00000341423 A0A1B0GW64 132 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 RBFOX3A6NFN3 312 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 TCAPO15273 167 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 ZFPL1O95159 310 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 APOMO95445 188 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 IGHA1P01876 353 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 LIMS3P0CW19 117 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 LIMS4P0CW20 117 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 FOXE3Q13461 319 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 DEDD2Q8WXF8 326 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 NPDC1Q9NQX5 325 aaPredicted RBP6.92□□□□□ -1.3
HMGB1-203ENST00000341423 U3KQ87 197 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 LAMB2P55268 1798 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 LYPD3O95274 346 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 MELTFP08582 738 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 HSPE1P61604 102 aaKnown RBP6.92□□□□□ -1.3
HMGB1-203ENST00000341423 VWC2Q2TAL6 325 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 STPG2Q8N412 459 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 Q9HAA7 133 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 NXT2Q9NPJ8 142 aaKnown RBP6.92□□□□□ -1.3
HMGB1-203ENST00000341423 IL20Q9NYY1 176 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 DSPPQ9NZW4 1301 aa6.92□□□□□ -1.3
HMGB1-203ENST00000341423 C14orf177Q52M58 125 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 OR2C3Q8N628 320 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 FAM131CQ96AQ9 280 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 TMEM167BQ9NRX6 74 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 GGTLC3B5MD39 225 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 H3BP45 60 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 OPRL1P41146 370 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 TUBB1Q9H4B7 451 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 TLN2Q9Y4G6 2542 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 ATP5G1P05496 136 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 ATP5G3P48201 142 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 ERVFC1-1P60608 527 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 BLOC1S1P78537 153 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 ATP6V1FQ16864 119 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 PRSS54Q6PEW0 395 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 PRSS45Q7RTY3 260 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 TEX45Q8NA69 505 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 SEC22CQ9BRL7 303 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 GEMIN7Q9H840 131 aaKnown RBP6.91□□□□□ -1.3
HMGB1-203ENST00000341423 TMEM14BQ9NUH8 114 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 ZNF98A6NK75 572 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 IGKV1D-12P01611 117 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 TRGC1P0CF51 173 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 ATP5IP56385 69 aaPredicted RBP6.91□□□□□ -1.3
HMGB1-203ENST00000341423 RPL36AP83881 106 aaKnown RBP6.91□□□□□ -1.3
HMGB1-203ENST00000341423 INSL4Q14641 139 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 MORN3Q6PF18 240 aaPredicted RBP6.91□□□□□ -1.3
HMGB1-203ENST00000341423 WDR82Q6UXN9 313 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 ARRDC1Q8N5I2 433 aa6.91□□□□□ -1.3
HMGB1-203ENST00000341423 RPL36ALQ969Q0 106 aaKnown RBP6.91□□□□□ -1.3
HMGB1-203ENST00000341423 ZNF561-AS1K7EIQ3 104 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 PRSS1P07477 247 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 RNASE1P07998 156 aaKnown RBP6.9□□□□□ -1.3
HMGB1-203ENST00000341423 APOOLQ6UXV4 268 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 HIST2H3AQ71DI3 136 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 PLXNA3P51805 1871 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 ARHGEF17Q96PE2 2063 aaPredicted RBP6.9□□□□□ -1.3
HMGB1-203ENST00000341423 IGKV2D-24A0A075B6R9 120 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 C15orf61A6NNL5 157 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 GCGP01275 180 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 NMUP48645 174 aa6.9□□□□□ -1.3
HMGB1-203ENST00000341423 CHD3Q12873 2000 aaKnown RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms