RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 VN1R1Q9GZP7 353 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 TRBV24-1A0A075B6N3 115 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 A0A1B0GUT8 65 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 RAMP1O60894 148 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 NEURL1O76050 574 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 PPYP01298 95 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 CKS2P33552 79 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 ATP5EP56381 51 aaPredicted RBP2.83□□□□□ -1.96
CSMD3-202ENST00000339701 OR52E5Q8NH55 327 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 CLDND2Q8NHS1 167 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 MRPL27Q9P0M9 148 aaKnown RBP2.83□□□□□ -1.96
CSMD3-202ENST00000339701 SIGLEC7Q9Y286 467 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 TRBV4-1A0A0J9YWV2 114 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 C9orf170A2RU37 121 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 HYPMO75409 117 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 TMEM50AO95807 157 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 APCSP02743 223 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 EMP1P54849 157 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 SPANXN1Q5VSR9 72 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 ORMDL3Q8N138 153 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 RNF182Q8N6D2 247 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 NPWQ8N729 165 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 C4orf45Q96LM5 186 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 QTRT1Q9BXR0 403 aaKnown RBP2.83□□□□□ -1.96
CSMD3-202ENST00000339701 PLA2G12AQ9BZM1 189 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 LRRK2Q5S007 2527 aa2.83□□□□□ -1.96
CSMD3-202ENST00000339701 K7ESF4 209 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 DPM2O94777 84 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 NDUFC2O95298 119 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 LGALS3P17931 250 aaKnown RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 CFPP27918 469 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 CSF2RBP32927 897 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 GDF5P43026 501 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 ZNF415Q09FC8 603 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 TIMM23BQ5SRD1 257 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 C10orf113Q5VZT2 155 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 LINC00469Q8N7U9 141 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PRSS33Q8NF86 280 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 OR10D3Q8NH80 312 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SMIM8Q96KF7 97 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 ZNF703Q9H7S9 590 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 DCAF16Q9NXF7 216 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 FN1P02751 2386 aaKnown RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 A0A096LPE4 126 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 A0A1W2PPZ6 126 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 CXCL13O43927 109 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 TNFRSF6BO95407 300 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 COX7A1P24310 79 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SLAQ13239 276 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 KLF9Q13886 244 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 IBA57Q5T440 356 aaKnown RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 FAM53AQ6NSI3 398 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 LCN15Q6UWW0 184 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SDHCQ99643 169 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 SSBP3Q9BWW4 388 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 TMEM222Q9H0R3 208 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PPIAL4EA0A075B759 164 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 C7orf77A4D0Y5 90 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PPIAL4DF5H284 164 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 CCL22O00626 93 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 CST7O76096 145 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PPIAL4FP0DN26 164 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 DAPP51397 102 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 MDP1Q86V88 176 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 HOGA1Q86XE5 327 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 RNF152Q8N8N0 203 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 HINT3Q9NQE9 182 aaKnown RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PPIAL4AQ9Y536 164 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PHLDA3Q9Y5J5 127 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 GPR179Q6PRD1 2367 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 GGTLC3B5MD39 225 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 DUSP14O95147 198 aaKnown RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 NAPSAO96009 420 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 NGFP01138 241 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 ATXN8Q156A1 80 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 CD200R1LQ6Q8B3 271 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 RAX2Q96IS3 184 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 RNF122Q9H9V4 155 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 B9D1Q9UPM9 204 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 A0A1W2PRE2 83 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 HSD52Q0P140 79 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 C1orf100Q5SVJ3 147 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 UTF1Q5T230 341 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 RFLNBQ8N5W9 214 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 LRRC29Q8WV35 223 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 NDUFAF3Q9BU61 184 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 ABHD14AQ9BUJ0 271 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 MEGF9Q9H1U4 602 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 NPDC1Q9NQX5 325 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 GPR27Q9NS67 375 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 PCSK5Q92824 1860 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 IGHV5-51A0A0C4DH38 117 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 A0A1W2PRX2 142 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 H3BSH0 61 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 AMY1AP04745 511 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 CCL3P10147 92 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 GAGE2BQ13066 116 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 GAGE2EQ4V326 116 aa2.82□□□□□ -1.96
CSMD3-202ENST00000339701 WDR25Q64LD2 544 aaPredicted RBP2.82□□□□□ -1.96
CSMD3-202ENST00000339701 FAM214BQ7L5A3 538 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms