RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 WNT10AQ9GZT5 417 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 C11orf68Q9H3H3 251 aaKnown RBP10.72□□□□□ -0.69
SDC3-201ENST00000336798 NHSQ6T4R5 1651 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 GLI3P10071 1580 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 B9A039 149 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 RND3P61587 244 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 F5P12259 2224 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 MT-ND6P03923 174 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 FAM216BQ8N7L0 139 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 SFRP2Q96HF1 295 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 SRD5A1P18405 259 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 CBLN1P23435 193 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 ASIPP42127 132 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 TMEM106BQ9NUM4 274 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 SCN7AQ01118 1682 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 FSTP19883 344 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 LHX2P50458 406 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 NHLRC3Q5JS37 347 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 CYP2G1PQ6ZSU1 146 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 PPP1R27Q86WC6 154 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 OR5AN1Q8NGI8 311 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 PKIBQ9C010 78 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 KCNE5Q9UJ90 142 aa10.72□□□□□ -0.69
SDC3-201ENST00000336798 LIMS1P48059 325 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 TNFSF10P50591 281 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 AQP3Q92482 292 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 C5orf66Q9H5L9 145 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 ATRAIDQ6UW56 229 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 SEMA5BQ9P283 1151 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 MIA3Q5JRA6 1907 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 TRBV7-9A0A0J9YWB2 115 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 SLC17A3O00476 420 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 LTBRP36941 435 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 SFTA2Q6UW10 78 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 TMEM183AQ8IXX5 376 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 TEX45Q8NA69 505 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 CLDND2Q8NHS1 167 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 LOXL4Q96JB6 756 aa10.71□□□□□ -0.69
SDC3-201ENST00000336798 MCM3APO60318 1980 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 C1QTNF9BB2RNN3 333 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 IFNL4K9M1U5 179 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 CGAP01215 116 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 TFF1P04155 84 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 GCHFRP30047 84 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 ZNF146Q15072 292 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 CFAP161Q6P656 301 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 OR4X2Q8NGF9 303 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 DEFB104AQ8WTQ1 72 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 ABHD17AQ96GS6 310 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 C2orf88Q9BSF0 95 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 ASXL3Q9C0F0 2248 aa10.71□□□□□ -0.7
SDC3-201ENST00000336798 PRR32B1ATL7 298 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 IL6RP08887 468 aaPredicted RBP10.7□□□□□ -0.7
SDC3-201ENST00000336798 C8orf82Q6P1X6 216 aaPredicted RBP10.7□□□□□ -0.7
SDC3-201ENST00000336798 NPIPB4C9JG80 1138 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 GATA2P23769 480 aaPredicted RBP10.7□□□□□ -0.7
SDC3-201ENST00000336798 TFF3Q07654 80 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 C1orf162Q8NEQ5 155 aaPredicted RBP10.7□□□□□ -0.7
SDC3-201ENST00000336798 NDUFAF3Q9BU61 184 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 TRBV5-5A0A0J9YX44 114 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 IGFBP2P18065 325 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 Q5BKY6 102 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 SCGB3A1Q96QR1 104 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 RREB1Q92766 1687 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 DOCK5Q9H7D0 1870 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 RAMP1O60894 148 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 OR5P3Q8WZ94 311 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 KIAA1551Q9HCM1 1747 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 APOMO95445 188 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 TYMSP04818 313 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 ERGP11308 486 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 OR11H4Q8NGC9 324 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 IMMP2LQ96T52 175 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 G6PC2Q9NQR9 355 aa10.7□□□□□ -0.7
SDC3-201ENST00000336798 TRIP12Q14669 1992 aaPredicted RBP10.7□□□□□ -0.7
SDC3-201ENST00000336798 RIPPLY2Q5TAB7 128 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 COLCA1Q6ZS62 124 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 TPRP12270 2363 aaKnown RBP10.69□□□□□ -0.7
SDC3-201ENST00000336798 A0A0G2JMM0 328 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 A0A1W2PPB8 328 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 A0A1W2PRS3 328 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 KIR3DP1A8MWS1 328 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 PEX7O00628 323 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 PTGDSP41222 190 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 STHQ8IWL8 128 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 CITED2Q99967 270 aaPredicted RBP10.69□□□□□ -0.7
SDC3-201ENST00000336798 ZNF414Q96IQ9 312 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 Q96M66 194 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 PRELID3AQ96N28 172 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 C7orf66A4D0T2 115 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 APOHP02749 345 aaPredicted RBP10.69□□□□□ -0.7
SDC3-201ENST00000336798 PPP1R32Q7Z5V6 425 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 LHFPL4Q7Z7J7 247 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 C14orf144Q96I85 54 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 JKAMPQ9P055 326 aa10.69□□□□□ -0.7
SDC3-201ENST00000336798 NPIPB8E9PQR5 432 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 NPIPB7O75200 414 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 ZNF415Q09FC8 603 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 TMEM187Q14656 261 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 ASPHD2Q6ICH7 369 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms