RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TEX45Q8NA69 505 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 MANBALQ9NQG1 85 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 MMP26Q9NRE1 261 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 HILPDAQ9Y5L2 63 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 FBLL1A6NHQ2 334 aaKnown RBP5.72□□□□□ -1.49
SF3B1-201ENST00000335508 PITX3O75364 302 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 MOSP00540 346 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 RND2P52198 227 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 LRP11Q86VZ4 500 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 MISP3Q96FF7 219 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 OR10C1Q96KK4 312 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 PLSCR3Q9NRY6 295 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 A1L4Q6 167 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 H0YL77 283 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 S1PR2O95136 353 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 NMBP08949 121 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 CCL3L1P16619 93 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 OR10J1P30954 320 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 GALR1P47211 349 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 C1orf122Q6ZSJ8 110 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 PPP1R27Q86WC6 154 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 ZCCHC24Q8N2G6 241 aaKnown RBP5.72□□□□□ -1.49
SF3B1-201ENST00000335508 ZNF835Q9Y2P0 537 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 DOCK11Q5JSL3 2073 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 TNFRSF6BO95407 300 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 CGAP01215 116 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 SIGIRRQ6IA17 410 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 TMEM144Q7Z5S9 345 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 OR4P4Q8NGL7 312 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 VAX2Q9UIW0 290 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 KLF2Q9Y5W3 355 aaPredicted RBP5.72□□□□□ -1.49
SF3B1-201ENST00000335508 RNASEK-C17orf49H0YIS7 233 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 TCAPO15273 167 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 HAGHQ16775 308 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 ZNF429Q86V71 674 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 TNFRSF19Q9NS68 423 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 TIMM9Q9Y5J7 89 aa5.72□□□□□ -1.49
SF3B1-201ENST00000335508 AP4M1O00189 453 aa5.71□□□□□ -1.49
SF3B1-201ENST00000335508 PAX5Q02548 391 aa5.71□□□□□ -1.49
SF3B1-201ENST00000335508 FAM106AQ4KMX7 169 aa5.71□□□□□ -1.49
SF3B1-201ENST00000335508 LY6G6FQ5SQ64 297 aa5.71□□□□□ -1.49
SF3B1-201ENST00000335508 SAMD13Q5VXD3 122 aa5.71□□□□□ -1.49
SF3B1-201ENST00000335508 LDLRAD3Q86YD5 345 aa5.71□□□□□ -1.49
SF3B1-201ENST00000335508 RNASEH2CQ8TDP1 164 aaKnown RBP5.71□□□□□ -1.49
SF3B1-201ENST00000335508 SRSF12Q8WXF0 261 aaKnown RBP5.71□□□□□ -1.49
SF3B1-201ENST00000335508 MYLKQ15746 1914 aa5.71□□□□□ -1.49
SF3B1-201ENST00000335508 CFAP46Q8IYW2 2715 aa5.71□□□□□ -1.49
SF3B1-201ENST00000335508 E7EQL1 145 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 LINC00869P0C866 280 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 MEF2BQ02080 365 aaPredicted RBP5.71□□□□□ -1.5
SF3B1-201ENST00000335508 RPRMLQ8N4K4 120 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 IL36RNQ9UBH0 155 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 FAM74A7A6NL05 159 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 NDUFS6O75380 124 aaKnown RBP5.71□□□□□ -1.5
SF3B1-201ENST00000335508 PRR30Q53SZ7 412 aaPredicted RBP5.71□□□□□ -1.5
SF3B1-201ENST00000335508 OR4X1Q8NH49 305 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 TP53RKQ96S44 253 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 DMRTA2Q96SC8 542 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 PARP12Q9H0J9 701 aaKnown RBP5.71□□□□□ -1.5
SF3B1-201ENST00000335508 PRRC2AP48634 2157 aaKnown RBP5.71□□□□□ -1.5
SF3B1-201ENST00000335508 ZNHIT1O43257 154 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 NXPH3O95157 252 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 OR10J4P0C629 311 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 STAG3L3P0CL85 134 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 UBE2G2P60604 165 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 C20orf24Q9BUV8 137 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 MEOX2P50222 304 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 AANATQ16613 207 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 TMEM241Q24JQ0 296 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 BSXQ3C1V8 233 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 TMEM167AQ8TBQ9 72 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 NIT2Q9NQR4 276 aa5.71□□□□□ -1.5
SF3B1-201ENST00000335508 IGHV3-72A0A0B4J1Y9 119 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 ZNF785A8K8V0 405 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 B4DEV8 164 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 NBR2O15453 112 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 WISP1O95388 367 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 GPX4P36969 197 aaPredicted RBP5.7□□□□□ -1.5
SF3B1-201ENST00000335508 FXYD3Q14802 87 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 OR2D3Q8NGH3 330 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 OR51G1Q8NGK1 321 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 BET1LQ9NYM9 111 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 GAB2Q9UQC2 676 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 ANKRD17O75179 2603 aaKnown RBP5.7□□□□□ -1.5
SF3B1-201ENST00000335508 IGKV1D-13A0A0B4J2D9 117 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 C8orf88P0DMB2 117 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 IGKV1-13P0DP09 117 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 COQ2Q96H96 371 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 P2RX4Q99571 388 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 WDR61Q9GZS3 305 aaKnown RBP5.7□□□□□ -1.5
SF3B1-201ENST00000335508 HSPB7Q9UBY9 170 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 TMEM218A2RU14 115 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 C17orf98A8MV24 154 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 F8VVB4 439 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 F8VWA3 439 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 BMPR1BO00238 502 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 IGHV1-8P0DP01 117 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 DYNLT3P51808 116 aa5.7□□□□□ -1.5
SF3B1-201ENST00000335508 DAZAP2Q15038 168 aaPredicted RBP5.7□□□□□ -1.5
SF3B1-201ENST00000335508 Q6ZR03 302 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms