RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 GGTLC1Q9BX51 225 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 PTPRQQ9UMZ3 2332 aa16.44■□□□□ 0.22
VPS53-201ENST00000291074 CT45A6P0DMU7 189 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 CT45A5P0DMU8 189 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 CT45A7P0DMV0 189 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 UBE2G2P60604 165 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 TMEM241Q24JQ0 296 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 SLC25A48Q6ZT89 311 aaKnown RBP16.43■□□□□ 0.22
VPS53-201ENST00000291074 SSMEM1Q8WWF3 244 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 CORO2AQ92828 525 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 SLC25A10Q9UBX3 287 aaPredicted RBP16.43■□□□□ 0.22
VPS53-201ENST00000291074 TRGV8A0A0C4DH27 118 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 RND2P52198 227 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 LRFN3Q9BTN0 628 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 LINC00574Q9H8X3 128 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 FOXA2Q9Y261 457 aaPredicted RBP16.43■□□□□ 0.22
VPS53-201ENST00000291074 PXMP4Q9Y6I8 212 aa16.43■□□□□ 0.22
VPS53-201ENST00000291074 hADV38S2A0JD32 116 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 NKX6-3A6NJ46 265 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 SEC14L6B5MCN3 397 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 TMEM250H0YL14 139 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 LY86O95711 162 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 TRGC2P03986 189 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 S100A9P06702 114 aaKnown RBP16.42■□□□□ 0.22
VPS53-201ENST00000291074 HSPE1P61604 102 aaKnown RBP16.42■□□□□ 0.22
VPS53-201ENST00000291074 RPL23P62829 140 aaKnown RBP16.42■□□□□ 0.22
VPS53-201ENST00000291074 TBR1Q16650 682 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 ARSJQ5FYB0 599 aaPredicted RBP16.42■□□□□ 0.22
VPS53-201ENST00000291074 SLC24A4Q8NFF2 622 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 FAM210BQ96KR6 192 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 SAP30LQ9HAJ7 183 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 SRRM4A7MD48 611 aaKnown RBP16.42■□□□□ 0.22
VPS53-201ENST00000291074 NPY1RP25929 384 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 C1orf87Q8N0U7 546 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 ADTRPQ96IZ2 230 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 JKAMPQ9P055 326 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 CA2P00918 260 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 NPPCP23582 126 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 RPL31P62899 125 aaKnown RBP16.42■□□□□ 0.22
VPS53-201ENST00000291074 C16orf82Q7Z2V1 217 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 OR51G1Q8NGK1 321 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 OR13D1Q8NGV5 346 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 CCL17Q92583 94 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 NEUROG1Q92886 237 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 SLC35D1Q9NTN3 355 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 TMEM242Q9NWH2 141 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 LINC00312Q9Y6C7 94 aa16.42■□□□□ 0.22
VPS53-201ENST00000291074 A0A1W2PPV4 95 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 C11orf94C9JXX5 98 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 CLN5O75503 358 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 SMIM6P0DI80 62 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 OPRK1P41145 380 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 ATP5G3P48201 142 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 NDUFA6P56556 154 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 TMPRSS3P57727 454 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 NECAP1Q8NC96 275 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 GGACTQ9BVM4 153 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 OR51B2Q9Y5P1 312 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 MPDU1O75352 247 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 BSXQ3C1V8 233 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 NEIL1Q96FI4 390 aaPredicted RBP16.41■□□□□ 0.22
VPS53-201ENST00000291074 WFIKKN1Q96NZ8 548 aa16.41■□□□□ 0.22
VPS53-201ENST00000291074 HRASP01112 189 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 LYPD2Q6UXB3 125 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 FAM122AQ96E09 287 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 SCNM1Q9BWG6 230 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 ZNF835Q9Y2P0 537 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST1H2BKO60814 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST1H2BJP06899 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST1H2BOP23527 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST1H2BBP33778 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST1H2BDP58876 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST1H2BCP62807 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST2H2BEQ16778 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST1H2BHQ93079 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST1H2BNQ99877 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 HIST1H2BMQ99879 126 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 ENY2Q9NPA8 101 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 DOK5Q9P104 306 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 SSUH2Q9Y2M2 353 aa16.4■□□□□ 0.22
VPS53-201ENST00000291074 LSM4Q9Y4Z0 139 aaKnown RBP16.4■□□□□ 0.22
VPS53-201ENST00000291074 S100A8P05109 93 aa16.39■□□□□ 0.21
VPS53-201ENST00000291074 ARL14EPLP0DKL9 152 aa16.39■□□□□ 0.21
VPS53-201ENST00000291074 CST9LP1Q5W188 147 aa16.39■□□□□ 0.21
VPS53-201ENST00000291074 SPNS3Q6ZMD2 512 aa16.39■□□□□ 0.21
VPS53-201ENST00000291074 H1FXQ92522 213 aaKnown RBP16.39■□□□□ 0.21
VPS53-201ENST00000291074 MRPL20Q9BYC9 149 aaKnown RBP16.39■□□□□ 0.21
VPS53-201ENST00000291074 TMEM178BH3BS89 294 aa16.39■□□□□ 0.21
VPS53-201ENST00000291074 REG1BP48304 166 aa16.39■□□□□ 0.21
VPS53-201ENST00000291074 POU2AF1Q16633 256 aa16.39■□□□□ 0.21
VPS53-201ENST00000291074 PPIAL4EA0A075B759 164 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 PPIAL4DF5H284 164 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 FAM87AP0C7U9 286 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 PPIAL4FP0DN26 164 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 TMEM200BQ69YZ2 307 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 OR5T1Q8NG75 326 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 ABHD5Q8WTS1 349 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 TMEM204Q9BSN7 226 aa16.38■□□□□ 0.21
VPS53-201ENST00000291074 NPVFQ9HCQ7 196 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms