RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 CD24P25063 80 aa10.46□□□□□ -0.74
HIF3A-201ENST00000244302 Q5PR19 223 aa10.46□□□□□ -0.74
HIF3A-201ENST00000244302 DYNAPQ8N1N2 210 aa10.46□□□□□ -0.74
HIF3A-201ENST00000244302 HSD17B10Q99714 261 aaKnown RBP10.46□□□□□ -0.74
HIF3A-201ENST00000244302 SLC25A31Q9H0C2 315 aa10.46□□□□□ -0.74
HIF3A-201ENST00000244302 MAGT1Q9H0U3 335 aa10.46□□□□□ -0.74
HIF3A-201ENST00000244302 SIRPDQ9H106 197 aa10.46□□□□□ -0.74
HIF3A-201ENST00000244302 C11orf1Q9H5F2 150 aa10.46□□□□□ -0.74
HIF3A-201ENST00000244302 RAB9BQ9NP90 201 aa10.46□□□□□ -0.74
HIF3A-201ENST00000244302 METTL1Q9UBP6 276 aaKnown RBP10.46□□□□□ -0.74
HIF3A-201ENST00000244302 MYO9AB2RTY4 2548 aa10.46□□□□□ -0.74
HIF3A-201ENST00000244302 NDUFS8O00217 210 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 EIF3GO75821 320 aaKnown RBP eCLIP10.45□□□□□ -0.74
HIF3A-201ENST00000244302 S100GP29377 79 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 MAS1LP35410 378 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 EWSR1Q01844 656 aaKnown RBP eCLIP10.45□□□□□ -0.74
HIF3A-201ENST00000244302 CLINT1Q14677 625 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 HLA-DRB5Q30154 266 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 ZNF833PQ6ZTB9 187 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 OR2C3Q8N628 320 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 ZNF596Q8TC21 504 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 CLEC7AQ9BXN2 247 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 HILPDAQ9Y5L2 63 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 BUB1B-PAK6H3BSN5 160 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 M0R036 132 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 ENSAO43768 121 aaKnown RBP10.45□□□□□ -0.74
HIF3A-201ENST00000244302 AVPP01185 164 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 ARG1P05089 322 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 SNRNP70P08621 437 aaKnown RBP10.45□□□□□ -0.74
HIF3A-201ENST00000244302 MYOD1P15172 320 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 USF1P22415 310 aaPredicted RBP10.45□□□□□ -0.74
HIF3A-201ENST00000244302 PRTN3P24158 256 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 ZNF66Q6ZN08 573 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 CIARTQ8N365 385 aaPredicted RBP10.45□□□□□ -0.74
HIF3A-201ENST00000244302 WFDC11Q8NEX6 87 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 LHX4Q969G2 390 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 RAB39BQ96DA2 213 aa10.45□□□□□ -0.74
HIF3A-201ENST00000244302 LIN7CQ9NUP9 197 aaKnown RBP10.45□□□□□ -0.74
HIF3A-201ENST00000244302 HOXB4P17483 251 aaPredicted RBP10.44□□□□□ -0.74
HIF3A-201ENST00000244302 RAB5AP20339 215 aa10.44□□□□□ -0.74
HIF3A-201ENST00000244302 NKX2-1P43699 371 aaPredicted RBP10.44□□□□□ -0.74
HIF3A-201ENST00000244302 SNRPEP62304 92 aaKnown RBP10.44□□□□□ -0.74
HIF3A-201ENST00000244302 LINC00311Q8N616 119 aa10.44□□□□□ -0.74
HIF3A-201ENST00000244302 Q96MF0 132 aa10.44□□□□□ -0.74
HIF3A-201ENST00000244302 S1PR3Q99500 378 aa10.44□□□□□ -0.74
HIF3A-201ENST00000244302 CACNG5Q9UF02 275 aa10.44□□□□□ -0.74
HIF3A-201ENST00000244302 GAB2Q9UQC2 676 aa10.44□□□□□ -0.74
HIF3A-201ENST00000244302 SONP18583 2426 aaKnown RBP10.44□□□□□ -0.74
HIF3A-201ENST00000244302 A0A1W2PPH5 198 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 M0R1W7 72 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 TOX4O94842 621 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 VDAC1P21796 283 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 NHLH2Q02577 135 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 BAXQ07812 192 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 CATR1Q13166 79 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 AKIRIN2Q53H80 203 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 SPINK9Q5DT21 86 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 C1QL4Q86Z23 238 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 IL22RA2Q969J5 263 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 NABP2Q9BQ15 211 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 HIPK2Q9H2X6 1198 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 H0YJW9 148 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 LY6LH3BQJ8 138 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 FOXH1O75593 365 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 OR9G9P0C7N8 305 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 SULT1A1P50225 295 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 POLR2GP62487 172 aaKnown RBP eCLIP10.43□□□□□ -0.74
HIF3A-201ENST00000244302 RUSC1-AS1Q66K80 236 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 DPPA3Q6W0C5 159 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 ETV3LQ6ZN32 361 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 TMEM182Q6ZP80 229 aaPredicted RBP10.43□□□□□ -0.74
HIF3A-201ENST00000244302 HSD17B11Q8NBQ5 300 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 RNASE11Q8TAA1 199 aaKnown RBP10.43□□□□□ -0.74
HIF3A-201ENST00000244302 FAM213BQ8TBF2 198 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 GNPNAT1Q96EK6 184 aaPredicted RBP10.43□□□□□ -0.74
HIF3A-201ENST00000244302 SH3BGRL3Q9H299 93 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 LYRM2Q9NU23 88 aaPredicted RBP10.43□□□□□ -0.74
HIF3A-201ENST00000244302 INSIG2Q9Y5U4 225 aa10.43□□□□□ -0.74
HIF3A-201ENST00000244302 RNF212BA8MTL3 300 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 TMEM50AO95807 157 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 CNTFRP26992 372 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 SSX2Q16385 188 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 TMEM30BQ3MIR4 351 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 PIP4P2Q8N4L2 257 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 AJUBAQ96IF1 538 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 BEX4Q9NWD9 120 aaPredicted RBP10.42□□□□□ -0.74
HIF3A-201ENST00000244302 MARCH11A6NNE9 402 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 P0C879 139 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 PRRX1P54821 245 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 OR2B8PP59922 312 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 VAMP2P63027 116 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 PAX8Q06710 450 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 MSMO1Q15800 293 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 SOHLH1Q5JUK2 328 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 TGIF2LXQ8IUE1 241 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 OR11H6Q8NGC7 330 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 OR13D1Q8NGV5 346 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 OR2G3Q8NGZ4 309 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 R3HDM4Q96D70 268 aa10.42□□□□□ -0.74
HIF3A-201ENST00000244302 SLC35D1Q9NTN3 355 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 345.1 ms