RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TMEM38AQ9H6F2 299 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 DNAJC4Q9NNZ3 241 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ASCL3Q9NQ33 180 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TMEFF2Q9UIK5 374 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 E9PLN8 166 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 H3BQ15 152 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 GCM2O75603 506 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FAM157BP0CG42 384 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 RPL27P61353 136 aaKnown RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 MBOAT2Q6ZWT7 520 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TCF24Q7RTU0 167 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 WFDC11Q8NEX6 87 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM54Q969K7 222 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 VKORC1Q9BQB6 163 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ZFP64Q9NPA5 681 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 GPR132Q9UNW8 380 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 NRAPQ86VF7 1730 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TRGV4A0A0C4DH28 118 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 G3V2L1 256 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ADAMTSL4Q6UY14 1074 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 C9orf62Q8N4C0 152 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 GDF15Q99988 308 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 MRM2Q9UI43 246 aaKnown RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 PRNDQ9UKY0 176 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 NTNG1Q9Y2I2 539 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 KIAA1671Q9BY89 1806 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ABCA3Q99758 1704 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 MEX3AA1L020 520 aaKnown RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 C7orf77A4D0Y5 90 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FAM72CH0Y354 149 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 H3BMM0 161 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 C9orf135Q5VTT2 229 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FAM72DQ6L9T8 149 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ANKRD37Q7Z713 158 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM229BQ8NBD8 167 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 CLEC4CQ8WTT0 213 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 SORT1Q99523 831 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 HS3ST3B1Q9Y662 390 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 NBEAL2Q6ZNJ1 2754 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 MED19A0JLT2 244 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM189A5PLL7 270 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 FRG2CA6NGY1 282 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM178BH3BS89 294 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 GDF9O60383 454 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF883P0CG24 379 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 B4GALNT1Q00973 533 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 UBE2WQ96B02 151 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 C6orf106Q9H6K1 298 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 RHODO00212 210 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 HLA-DQB1P01920 261 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 PPICP45877 212 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 INSL3P51460 131 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 LYZP61626 148 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SSBP2P81877 361 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TIAL1Q01085 375 aaKnown RBP eCLIP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CGB2Q6NT52 195 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 FAM214BQ7L5A3 538 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 DOK4Q8TEW6 326 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 MARVELD3Q96A59 401 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CDCA4Q9BXL8 241 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 C15orf61A6NNL5 157 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 GASTP01350 101 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 IL13RA2Q14627 380 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SOWAHAQ2M3V2 549 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 GAPTQ8N292 157 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 AMER3Q8N944 861 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 BHLHE23Q8NDY6 225 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 OR8B12Q8NGG6 310 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 RARRES2Q99969 163 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 PRSS27Q9BQR3 290 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 PLA2G3Q9NZ20 509 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SLIT2O94813 1529 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 HYAL3O43820 417 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 PRKNO60260 465 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SAP30O75446 220 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM50AO95807 157 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 NGFP01138 241 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 IGHV4-39P01824 125 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TRACP01848 142 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CSRP3P50461 194 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SS18Q15532 418 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 BCDIN3DQ7Z5W3 292 aaKnown RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 GPHB5Q86YW7 130 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 MMD2Q8IY49 270 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CLDN19Q8N6F1 224 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 OR10G4Q8NGN3 311 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 OR10G9Q8NGN4 311 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 OR10G7Q8NGN6 311 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SSMEM1Q8WWF3 244 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 LYZL4Q96KX0 146 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 DUX3Q96PT4 197 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 RNF122Q9H9V4 155 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 KLF2Q9Y5W3 355 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TRAV1-2A0A0B4J238 106 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 PPIAL4CA0A0B4J2A2 164 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 A0A1W2PP11 408 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 NRG2O14511 850 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ZNHIT1O43257 154 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 NDUFB1O75438 58 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 PPIAL4GP0DN37 164 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms