RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 H0YJW9 148 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 M0QZK8 103 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 TNFSF12O43508 249 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 MOSP00540 346 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 VDAC1P21796 283 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 CYCSP99999 105 aaKnown RBP7.83□□□□□ -1.16
CLN3-261ENST00000637686 ANKRD55Q3KP44 614 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 ZNF585BQ52M93 769 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 TMEM177Q53S58 311 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 C9orf152Q5JTZ5 239 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 LIN54Q6MZP7 749 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 ZNF695Q8IW36 515 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 SPAG16Q8N0X2 631 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 Q8N6K4 173 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 KLHDC1Q8N7A1 406 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 C5orf56Q8N8D9 126 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 ZNF383Q8NA42 475 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 OR52B4Q8NGK2 314 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 OR5M8Q8NGP6 311 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 OR51H1Q8NH63 302 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 OSR1Q8TAX0 266 aaPredicted RBP7.83□□□□□ -1.16
CLN3-261ENST00000637686 CASTOR1Q8WTX7 329 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 SPIN2AQ99865 258 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 SPIN2BQ9BPZ2 258 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 WASHC3Q9Y3C0 194 aa7.83□□□□□ -1.16
CLN3-261ENST00000637686 OR2A4O95047 310 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 HRASP01112 189 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 IFNA21P01568 189 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 GIPP09681 153 aaPredicted RBP7.82□□□□□ -1.16
CLN3-261ENST00000637686 NQO2P16083 231 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 VDAC2P45880 294 aaPredicted RBP7.82□□□□□ -1.16
CLN3-261ENST00000637686 F2RL1P55085 397 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 BRWD1-AS2P59051 145 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 LINC00205P59089 165 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 NMSQ5H8A3 153 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 HIST2H2BDQ6DRA6 164 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 SELENOHQ8IZQ5 122 aaKnown RBP7.82□□□□□ -1.16
CLN3-261ENST00000637686 C11orf44Q8N8P7 122 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 Q8N9W7 124 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 DRAXINQ8NBI3 349 aaPredicted RBP7.82□□□□□ -1.16
CLN3-261ENST00000637686 PPP1R14BQ96C90 147 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 RITA1Q96K30 269 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 OR2A7Q96R45 310 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 PLSCR3Q9NRY6 295 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 SLC35D1Q9NTN3 355 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 COA4Q9NYJ1 87 aa7.82□□□□□ -1.16
CLN3-261ENST00000637686 FGF16O43320 207 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 FCGR3BO75015 233 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 SPDEFO95238 335 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 P0C879 139 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 LPAR6P43657 344 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 LGALS7P47929 136 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 RAP2BP61225 183 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 FCN2Q15485 313 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 SP6Q3SY56 376 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 AARDQ4LEZ3 155 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 TMEM268Q5VZI3 342 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 OR11H7Q8NGC8 314 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 SGMS2Q8NHU3 365 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 LHFPL5Q8TAF8 219 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 SEC22AQ96IW7 307 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 NMES1Q9C002 83 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 WNT10AQ9GZT5 417 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 ZFP57Q9NU63 452 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 MGAT4CQ9UBM8 478 aa7.81□□□□□ -1.16
CLN3-261ENST00000637686 A0A1B0GU03 582 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 FAM90A26D6RGX4 464 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 RAMP3O60896 148 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 IGKV1-39P01597 117 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 IGKV1D-39P04432 117 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 CNTFRP26992 372 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 ERVK-16P61578 105 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 MMDQ15546 238 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 GGNBP1Q5YKI7 109 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 GSG1LQ6UXU4 331 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 CENPVQ7Z7K6 275 aaPredicted RBP7.8□□□□□ -1.16
CLN3-261ENST00000637686 AKAP14Q86UN6 197 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 TCTE3Q8IZS6 198 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 SLC35G3Q8N808 338 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 OR8H1Q8NGG4 311 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 OR4A5Q8NH83 315 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 VSTM2AQ8TAG5 236 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 FLYWCH2Q96CP2 140 aaKnown RBP7.8□□□□□ -1.16
CLN3-261ENST00000637686 RRNAD1Q96FB5 475 aaKnown RBP7.8□□□□□ -1.16
CLN3-261ENST00000637686 GPHA2Q96T91 129 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 TSNAXQ99598 290 aaKnown RBP7.8□□□□□ -1.16
CLN3-261ENST00000637686 RASL11BQ9BPW5 248 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 ZNF436Q9C0F3 470 aaPredicted RBP7.8□□□□□ -1.16
CLN3-261ENST00000637686 BET1LQ9NYM9 111 aa7.8□□□□□ -1.16
CLN3-261ENST00000637686 hCG_2014768A0A024R1R8 64 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 LINC01548A6NM66 108 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 MARCH11A6NNE9 402 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 H7C2Y5 167 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 FBXO24O75426 580 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 SNAPC5O75971 98 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 S1PR2O95136 353 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 LY86O95711 162 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 CRYZL1O95825 349 aa7.79□□□□□ -1.16
CLN3-261ENST00000637686 IL6RP08887 468 aaPredicted RBP7.79□□□□□ -1.16
CLN3-261ENST00000637686 CD28P10747 220 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms