RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 HELTA6NFD8 242 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 ZNF716A6NP11 495 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 SPINK8P0C7L1 97 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 YPEL5P62699 121 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 DOK3Q7L591 496 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 SPATA12Q7Z6I5 190 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 OR10D3Q8NH80 312 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 C18orf32Q8TCD1 76 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 TXNDC17Q9BRA2 123 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 UBE2ZQ9H832 354 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-213ENST00000636759 METTL7AQ9H8H3 244 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 UFC1Q9Y3C8 167 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 FREM3P0C091 2139 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 H0Y8X5 98 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 SIVA1O15304 175 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 SNAI2O43623 268 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 WISP1O95388 367 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 FRMD6-AS1P0C7T7 363 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 OR1D4P47884 311 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 DAP3P51398 398 aaKnown RBP5.76□□□□□ -1.49
SCN1A-213ENST00000636759 EGR4Q05215 589 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 ARL16Q0P5N6 197 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 SGCBQ16585 318 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 SPATA31B1PQ5VZV4 182 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 TMEM136Q6ZRR5 245 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 HARBI1Q96MB7 349 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 LYRM4Q9HD34 91 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 LAMTOR5O43504 91 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 HBZP02008 142 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 GABRG2P18507 467 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 CX3CL1P78423 397 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 IGLV3-21P80748 117 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-213ENST00000636759 CBLN3Q6UW01 205 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 DOLPP1Q86YN1 238 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 SLC22A18ASQ8N1D0 253 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 TPRX1Q8N7U7 411 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 CCL4L1Q8NHW4 92 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 PIGTQ969N2 578 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 ZNF442Q9H7R0 627 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 OR1A1Q9P1Q5 309 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 SHANK1Q9Y566 2161 aa5.76□□□□□ -1.49
SCN1A-213ENST00000636759 LEPROTL1O95214 131 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 IGHV4-34P06331 123 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 PTGDSP41222 190 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 REG1BP48304 166 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 OR1D5P58170 312 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 RPS15AP62244 130 aaKnown RBP5.75□□□□□ -1.49
SCN1A-213ENST00000636759 TFF2Q03403 129 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 KIR2DS3Q14952 304 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 CEACAM16Q2WEN9 425 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 PRR22Q8IZ63 422 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 STPG3Q8N7X2 389 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 OR8B12Q8NGG6 310 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 RLN3Q8WXF3 142 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 VSTM2LQ96N03 204 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 CACNG5Q9UF02 275 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 TNFRSF18Q9Y5U5 241 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 TRAV38-1A0A0B4J264 116 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 FOXI3A8MTJ6 420 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-213ENST00000636759 C2CD4DB7Z1M9 353 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 HRKO00198 91 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 MT-ATP6P00846 226 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 GATA3P23771 443 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 F2RP25116 425 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 RPL32P62910 135 aaKnown RBP5.75□□□□□ -1.49
SCN1A-213ENST00000636759 SAMD5Q5TGI4 173 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 SHISA6Q6ZSJ9 500 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 TMEFF1Q8IYR6 380 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 CA13Q8N1Q1 262 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 GAPTQ8N292 157 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 GPHA2Q96T91 129 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 TMEM147Q9BVK8 224 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 SCRT2Q9NQ03 307 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 ZFHX4Q86UP3 3567 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 ATG2BQ96BY7 2078 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 C2orf70A6NJV1 201 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 F5H5K5 113 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 SYS1-DBNDD2H3BUS1 97 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 ZNF121P58317 390 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-213ENST00000636759 TIMM23BQ5SRD1 257 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 TSACCQ96A04 125 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-213ENST00000636759 GPR82Q96P67 336 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 MAP1LC3CQ9BXW4 147 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 B4GALT7Q9UBV7 327 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 ERG28Q9UKR5 140 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 LHFPL6Q9Y693 200 aa5.75□□□□□ -1.49
SCN1A-213ENST00000636759 SCO2A0A1W2PP80 73 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 ATXN8OSP0DMR3 200 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 FUT7Q11130 342 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 SSX8Q7RTT4 187 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 OR10X1Q8NGY0 326 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 OR51H1Q8NH63 302 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 Q96M66 194 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 TMEM140Q9NV12 185 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 TIMM8BQ9Y5J9 83 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-213ENST00000636759 TRBV20OR9-2A0A075B6H5 130 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 IGKV1-9A0A0C4DH69 117 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 TDRD6O60522 2096 aaKnown RBP5.74□□□□□ -1.49
SCN1A-213ENST00000636759 MALLQ13021 153 aa5.74□□□□□ -1.49
SCN1A-213ENST00000636759 NRN1LQ496H8 165 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms