RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 PPIAL4EA0A075B759 164 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PPIAL4CA0A0B4J2A2 164 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PPIAL4DF5H284 164 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 J3QT63 122 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 RFPL3SP0C7P2 107 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PPIAL4FP0DN26 164 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PPP1CCP36873 323 aaKnown RBP8.86□□□□□ -0.99
LIG1-220ENST00000601091 CCL11P51671 97 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 DLK1P80370 383 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 RUNX1Q01196 453 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 SLC38A11Q08AI6 406 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PSG3Q16557 428 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 HIST3H3Q16695 136 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 LINC00596Q86U02 117 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 GPHA2Q96T91 129 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PSMG3Q9BT73 122 aaPredicted RBP8.86□□□□□ -0.99
LIG1-220ENST00000601091 FAM234AQ9H0X4 552 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PCNX3Q9H6A9 2034 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PI4KAP42356 2102 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 C5orf63A6NC05 138 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 CEACAM18A8MTB9 384 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PNRC1Q12796 327 aaPredicted RBP8.86□□□□□ -0.99
LIG1-220ENST00000601091 HEPN1Q6WQI6 88 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.86□□□□□ -0.99
LIG1-220ENST00000601091 NRGNQ92686 78 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 SARAFQ96BY9 339 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 ZNF488Q96MN9 340 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 Q9N2K0 584 aa8.86□□□□□ -0.99
LIG1-220ENST00000601091 SPTBN5Q9NRC6 3674 aaKnown RBP8.85□□□□□ -0.99
LIG1-220ENST00000601091 ETV2O00321 342 aaPredicted RBP8.85□□□□□ -0.99
LIG1-220ENST00000601091 ZNHIT1O43257 154 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 PSG2P11465 335 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 EDDM3BP56851 147 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 DPPA3Q6W0C5 159 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 PLEKHA3Q9HB20 300 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 IL36GQ9NZH8 169 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 C2orf16Q68DN1 1984 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 A0A1B0GUS0 222 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 G3V4G9 280 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 FAM157CP0CG43 387 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 SAXO1Q8IYX7 474 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 ZIC4Q8N9L1 334 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 NECAP1Q8NC96 275 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 NABP1Q96AH0 204 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 C19orf24Q9BVV8 132 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 SERTAD4Q9NUC0 356 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 VPREB3Q9UKI3 123 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 TPRP12270 2363 aaKnown RBP8.85□□□□□ -0.99
LIG1-220ENST00000601091 A0A1W2PR80 420 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 CCKARP32238 428 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 PPP1CBP62140 327 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 C3AR1Q16581 482 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 ACOT6Q3I5F7 207 aaPredicted RBP8.85□□□□□ -0.99
LIG1-220ENST00000601091 ZNF718Q3SXZ3 478 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 RARRES2Q99969 163 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 TMEM9BQ9NQ34 198 aa8.85□□□□□ -0.99
LIG1-220ENST00000601091 ARHGAP21Q5T5U3 1957 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 B4DEV8 164 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 K7EN84 100 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 PGLYRP1O75594 196 aaPredicted RBP8.84□□□□□ -0.99
LIG1-220ENST00000601091 TOMM40O96008 361 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 HSD52Q0P140 79 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 DUX4L9Q6RFH8 374 aaPredicted RBP8.84□□□□□ -0.99
LIG1-220ENST00000601091 OR8G5Q8NG78 346 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 MUCL1Q96DR8 90 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 C1orf147Q96MC9 270 aaPredicted RBP8.84□□□□□ -0.99
LIG1-220ENST00000601091 SIRPDQ9H106 197 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 SYNGR1O43759 233 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 CELA3AP09093 270 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 SPATA31B1PQ5VZV4 182 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 ASCL4Q6XD76 172 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 ZNF818PQ6ZRF7 136 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 PPP1R32Q7Z5V6 425 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 CXorf67Q86X51 503 aaPredicted RBP8.84□□□□□ -0.99
LIG1-220ENST00000601091 CFHR4Q92496 578 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 K7ESF4 209 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 ZNF737O75373 536 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 CRYGSP22914 178 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 TMEM241Q24JQ0 296 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 ZNF66Q6ZN08 573 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 CYB561D1Q8N8Q1 229 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 WDFY3Q8IZQ1 3526 aa8.84□□□□□ -0.99
LIG1-220ENST00000601091 C21orf140B9A014 251 aa8.83□□□□□ -1
LIG1-220ENST00000601091 KLF7O75840 302 aaPredicted RBP8.83□□□□□ -1
LIG1-220ENST00000601091 MT-CO3P00414 261 aa8.83□□□□□ -1
LIG1-220ENST00000601091 KITLGP21583 273 aa8.83□□□□□ -1
LIG1-220ENST00000601091 RND3P61587 244 aa8.83□□□□□ -1
LIG1-220ENST00000601091 TTTY12Q9BZ98 90 aa8.83□□□□□ -1
LIG1-220ENST00000601091 GCM1Q9NP62 436 aa8.83□□□□□ -1
LIG1-220ENST00000601091 KCNIP2Q9NS61 270 aa8.83□□□□□ -1
LIG1-220ENST00000601091 HSPB1P04792 205 aaKnown RBP8.83□□□□□ -1
LIG1-220ENST00000601091 TMEM251Q8N6I4 163 aa8.83□□□□□ -1
LIG1-220ENST00000601091 RFESDQ8TAC1 157 aa8.83□□□□□ -1
LIG1-220ENST00000601091 TMEM37Q8WXS4 190 aa8.83□□□□□ -1
LIG1-220ENST00000601091 LINC00470Q9BZP3 86 aa8.83□□□□□ -1
LIG1-220ENST00000601091 OR2D2Q9H210 308 aa8.83□□□□□ -1
LIG1-220ENST00000601091 PATZ1Q9HBE1 687 aaKnown RBP8.83□□□□□ -1
LIG1-220ENST00000601091 VAX2Q9UIW0 290 aa8.83□□□□□ -1
LIG1-220ENST00000601091 MDFIC2A0A1B0GVS7 189 aa8.83□□□□□ -1
LIG1-220ENST00000601091 LYL1P12980 280 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms