RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 DHFRP00374 187 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 HPRT1P00492 218 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 FCER2P06734 321 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 FGF2P09038 288 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 NQO2P16083 231 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 S100GP29377 79 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 ECI1P42126 302 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 SLURP1P55000 103 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 AADACL3Q5VUY0 350 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 ZNF818PQ6ZRF7 136 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 OR6Q1Q8NGQ2 317 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 OR6F1Q8NGZ6 308 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 ZNF2Q9BSG1 426 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 PLEKHA2Q9HB19 425 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 COMMD9Q9P000 198 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 ZNF257Q9Y2Q1 563 aa13.68□□□□□ -0.22
SHKBP1-204ENST00000594862 DPPA5A6NC42 116 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 RPL27AP46776 148 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 RPL8P62917 257 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 POU2AF1Q16633 256 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 GPR107Q5VW38 600 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 LPCAT3Q6P1A2 487 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 ZNF343Q6P1L6 599 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 ACSM6Q6P461 480 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 VKORC1L1Q8N0U8 176 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 TTC9CQ8N5M4 171 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 OR4C12Q96R67 309 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 NBEAL2Q6ZNJ1 2754 aa13.67□□□□□ -0.22
SHKBP1-204ENST00000594862 FAM25AB3EWG3 89 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 FAM25CB3EWG5 89 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 FAM25GB3EWG6 89 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 HPGDSO60760 199 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 PMP2P02689 132 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 ELK1P19419 428 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 HRH1P35367 487 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 RFX2P48378 723 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 ALDH3B2P48448 385 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 BRWD1-AS2P59051 145 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 SNX29P2Q8IUI4 249 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 NECAP1Q8NC96 275 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 B9D2Q9BPU9 175 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 BCL7BQ9BQE9 202 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 HRASLSQ9HDD0 168 aa13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 PEF1Q9UBV8 284 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-204ENST00000594862 NPIPB5A8MRT5 1133 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 ZNF735P0CB33 412 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 APELAP0DMC3 54 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 HLA-GP17693 338 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 GNRHRP30968 328 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 ERVK-16P61578 105 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 TSPAN5P62079 268 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 RHOGP84095 191 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 CD69Q07108 199 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 TATDN3Q17R31 274 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 OR4A47Q6IF82 309 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 OR51H1Q8NH63 302 aa13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 NAA50Q9GZZ1 169 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-204ENST00000594862 TRBV9A0A0B4J1U6 114 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 GPR31O00270 319 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 TBPP20226 339 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 F2RP25116 425 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 HLA-DMAP28067 261 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 ATP5G2Q06055 141 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 C10orf55Q5SWW7 151 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 THOC7Q6I9Y2 204 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 SSX9Q7RTT3 188 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 DMBX1Q8NFW5 382 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 RAB2BQ8WUD1 216 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 FYTTD1Q96QD9 318 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 GPHA2Q96T91 129 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 SRSF8Q9BRL6 282 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 COMMD5Q9GZQ3 224 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 SLC2A9Q9NRM0 540 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 FAM212BQ9NTI7 297 aaPredicted RBP13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 DNAH3Q8TD57 4116 aa13.64□□□□□ -0.23
SHKBP1-204ENST00000594862 TNCP24821 2201 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 ANKRD34BA5PLL1 514 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 TEX22C9J3V5 150 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 LY86O95711 162 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 RLN1P04808 185 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 HIST1H1BP16401 226 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 EXOSC2Q13868 293 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 VAX1Q5SQQ9 334 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 HSD17B13Q7Z5P4 300 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 LYSMD2Q8IV50 215 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 CADM3Q8N126 398 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 PRR25Q96S07 402 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 FXYD6Q9H0Q3 95 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 AKIP1Q9NQ31 210 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 EXTL2Q9UBQ6 330 aa13.63□□□□□ -0.23
SHKBP1-204ENST00000594862 CYB5BO43169 146 aa13.62□□□□□ -0.23
SHKBP1-204ENST00000594862 NOL3O60936 208 aaKnown RBP13.62□□□□□ -0.23
SHKBP1-204ENST00000594862 PGLYRP1O75594 196 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-204ENST00000594862 RPEL1Q2QD12 228 aa13.62□□□□□ -0.23
SHKBP1-204ENST00000594862 SLC38A6Q8IZM9 456 aa13.62□□□□□ -0.23
SHKBP1-204ENST00000594862 DGCR14Q96DF8 476 aaKnown RBP13.62□□□□□ -0.23
SHKBP1-204ENST00000594862 TMEM140Q9NV12 185 aa13.62□□□□□ -0.23
SHKBP1-204ENST00000594862 RABL2AQ9UBK7 228 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-204ENST00000594862 RABL2BQ9UNT1 228 aa13.62□□□□□ -0.23
SHKBP1-204ENST00000594862 LSM4Q9Y4Z0 139 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms