RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 GPHA2Q96T91 129 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 TINAGL1Q9GZM7 467 aaPredicted RBP9.67□□□□□ -0.86
UPF1-203ENST00000594504 TPSG1Q9NRR2 321 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 FBXO7Q9Y3I1 522 aa9.67□□□□□ -0.86
UPF1-203ENST00000594504 TRAV41A0A0B4J266 112 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 GPR31O00270 319 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 CA2P00918 260 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 IGLV1-40P01703 118 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 SAA1P0DJI8 122 aaPredicted RBP9.66□□□□□ -0.86
UPF1-203ENST00000594504 PTBP1P26599 531 aaKnown RBP eCLIP9.66□□□□□ -0.86
UPF1-203ENST00000594504 S100GP29377 79 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 SLURP1P55000 103 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 BRWD1-AS2P59051 145 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 ZNF616Q08AN1 781 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 MEF2DQ14814 521 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 AADACL3Q5VUY0 350 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 CCDC190Q86UF4 302 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 LHFPL1Q86WI0 220 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 SBSPONQ8IVN8 264 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 SPAG16Q8N0X2 631 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 POC5Q8NA72 575 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 OR4D10Q8NGI6 311 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 OR51H1Q8NH63 302 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 CD300LFQ8TDQ1 290 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 DLX4Q92988 240 aaPredicted RBP9.66□□□□□ -0.86
UPF1-203ENST00000594504 RSRP1Q9BUV0 290 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 VSIG4Q9Y279 399 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 V9GYH0 126 aa9.66□□□□□ -0.86
UPF1-203ENST00000594504 SOX15O60248 233 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 CREBL2O60519 120 aaPredicted RBP9.65□□□□□ -0.86
UPF1-203ENST00000594504 PGLYRP1O75594 196 aaPredicted RBP9.65□□□□□ -0.86
UPF1-203ENST00000594504 HRASP01112 189 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 RLN1P04808 185 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 OR8U8P0C7N1 319 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 AKAIN1P0CW23 69 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 ETV6P41212 452 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 TMEM267Q0VDI3 215 aaPredicted RBP9.65□□□□□ -0.86
UPF1-203ENST00000594504 ECSCRQ19T08 205 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 PYDC2Q56P42 97 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 SPANXN2Q5MJ10 180 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 SLC38A6Q8IZM9 456 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 MINDY2Q8NBR6 621 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 OR6Q1Q8NGQ2 317 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 VSTM2AQ8TAG5 236 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 ABHD5Q8WTS1 349 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 ARPC1AQ92747 370 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 AIFM2Q9BRQ8 373 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 SMAD5-AS1Q9Y6J3 95 aa9.65□□□□□ -0.86
UPF1-203ENST00000594504 COL7A1Q02388 2944 aa9.65□□□□□ -0.87
UPF1-203ENST00000594504 A0A1W2PN81 502 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 ANKRD20A5PA0PJZ0 165 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 OVOL1O14753 267 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 CNIH1O95406 144 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 HPRT1P00492 218 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 EGR2P11161 476 aaPredicted RBP9.64□□□□□ -0.87
UPF1-203ENST00000594504 PGAM2P15259 253 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 SPNP16150 400 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 CHRNA7P36544 502 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 RUNX1Q01196 453 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 PJVKQ0ZLH3 352 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 FXYD3Q14802 87 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 ZNF79Q15937 498 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 PRSS8Q16651 343 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 PHLDA2Q53GA4 152 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 IDO2Q6ZQW0 420 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 TCTEX1D1Q8N7M0 179 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 TERB2Q8NHR7 220 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 ZNF486Q96H40 463 aaPredicted RBP9.64□□□□□ -0.87
UPF1-203ENST00000594504 RHOVQ96L33 236 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 THAP7Q9BT49 309 aaPredicted RBP9.64□□□□□ -0.87
UPF1-203ENST00000594504 PLEKHA2Q9HB19 425 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 NUBP2Q9Y5Y2 271 aa9.64□□□□□ -0.87
UPF1-203ENST00000594504 IGHV4OR15-8A0A075B7B6 117 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 A0A087WW49 117 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 DISC1C4P0D8 188 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 ARPC1BO15143 372 aaKnown RBP9.63□□□□□ -0.87
UPF1-203ENST00000594504 SAP30O75446 220 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 OR2A4O95047 310 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 IGHV3-11P01762 117 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 ZNF735P0CB33 412 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 F2RP25116 425 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 TAS2R31P59538 309 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 SSBP2P81877 361 aaPredicted RBP9.63□□□□□ -0.87
UPF1-203ENST00000594504 MRGPRG-AS1Q2M3A8 158 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 SCGB2B2Q4G0G5 96 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 AKIRIN2Q53H80 203 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 C19orf54Q5BKX5 351 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 MMD2Q8IY49 270 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 VKORC1L1Q8N0U8 176 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 PUSL1Q8N0Z8 303 aaKnown RBP9.63□□□□□ -0.87
UPF1-203ENST00000594504 Q8N402 240 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 OR4C16Q8NGL9 310 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 GRPEL2Q8TAA5 225 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 ZFAND1Q8TCF1 268 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 MS4A10Q96PG2 267 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 OR2A7Q96R45 310 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 FAM103A1Q9BTL3 118 aaKnown RBP9.63□□□□□ -0.87
UPF1-203ENST00000594504 SLC2A9Q9NRM0 540 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 COMMD9Q9P000 198 aa9.63□□□□□ -0.87
UPF1-203ENST00000594504 FOXA2Q9Y261 457 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms