RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 WDR89Q96FK6 387 aaPredicted RBP8.91□□□□□ -0.98
LIG3-209ENST00000586435 CCDC140Q96MF4 163 aa8.91□□□□□ -0.98
LIG3-209ENST00000586435 FANCD2OSQ96PS1 177 aa8.91□□□□□ -0.98
LIG3-209ENST00000586435 FYTTD1Q96QD9 318 aaKnown RBP8.91□□□□□ -0.98
LIG3-209ENST00000586435 OR2A7Q96R45 310 aa8.91□□□□□ -0.98
LIG3-209ENST00000586435 DCUN1D5Q9BTE7 237 aa8.91□□□□□ -0.98
LIG3-209ENST00000586435 CCDC90BQ9GZT6 254 aa8.91□□□□□ -0.98
LIG3-209ENST00000586435 DCSTAMPQ9H295 470 aa8.91□□□□□ -0.98
LIG3-209ENST00000586435 SLC2A9Q9NRM0 540 aa8.91□□□□□ -0.98
LIG3-209ENST00000586435 NDUFB11Q9NX14 153 aa8.91□□□□□ -0.98
LIG3-209ENST00000586435 FBXL7Q9UJT9 491 aa8.91□□□□□ -0.98
LIG3-209ENST00000586435 TRDV1A0A1B0GX56 115 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 TMEM213A2RRL7 107 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 DPPA5A6NC42 116 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 E7EUB6 86 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 OR2C1O95371 312 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 DHFRP00374 187 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 HLA-AP01891 365 aaKnown RBP8.9□□□□□ -0.98
LIG3-209ENST00000586435 IL6RP08887 468 aaPredicted RBP8.9□□□□□ -0.98
LIG3-209ENST00000586435 ARL3P36405 182 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 HACD4Q5VWC8 232 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 ZNF57Q68EA5 555 aaPredicted RBP8.9□□□□□ -0.98
LIG3-209ENST00000586435 OR4A47Q6IF82 309 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 CNIH2Q6PI25 160 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 TMEM61Q8N0U2 210 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 ATG5Q9H1Y0 275 aa8.9□□□□□ -0.98
LIG3-209ENST00000586435 ELF5Q9UKW6 265 aaPredicted RBP8.9□□□□□ -0.98
LIG3-209ENST00000586435 PLECQ15149 4684 aaKnown RBP8.9□□□□□ -0.99
LIG3-209ENST00000586435 IGKV1D-13A0A0B4J2D9 117 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 A0A1B0GW64 132 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 SCGNO76038 276 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 IGKV1-13P0DP09 117 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 HIST1H1BP16401 226 aaKnown RBP8.89□□□□□ -0.99
LIG3-209ENST00000586435 CTRB1P17538 263 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 NFYAP23511 347 aaPredicted RBP8.89□□□□□ -0.99
LIG3-209ENST00000586435 PSMB6P28072 239 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 BRWD1-AS2P59051 145 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 MSMO1Q15800 293 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 ANKRD55Q3KP44 614 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 CDNFQ49AH0 187 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 FAM106AQ4KMX7 169 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 OR2B11Q5JQS5 317 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 CTRB2Q6GPI1 263 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 CLEC19AQ6UXS0 136 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 ZNF66Q6ZN08 573 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 NR2C2APQ86WQ0 139 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 VKORC1L1Q8N0U8 176 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 TCTEX1D2Q8WW35 142 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 NRG4Q8WWG1 115 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 CACNG8Q8WXS5 425 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 LINC00476Q8WZB0 136 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 EEF1AKMT3Q96AZ1 226 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 ST6GALNAC5Q9BVH7 336 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 GGTLC1Q9BX51 225 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 MLXQ9UH92 298 aa8.89□□□□□ -0.99
LIG3-209ENST00000586435 IGLV11-55A0A075B6I3 123 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 LOC102724200A0A096LPH7 203 aaPredicted RBP8.88□□□□□ -0.99
LIG3-209ENST00000586435 TRBV7-1A0A0A6YYK4 115 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 TRAV25A0A0B4J276 109 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 J3QRK9 145 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 NDUFB8O95169 186 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 HRASP01112 189 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 AREGP15514 252 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 RPL8P62917 257 aaKnown RBP8.88□□□□□ -0.99
LIG3-209ENST00000586435 C19orf35Q6ZS72 473 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 MFSD4AQ8N468 514 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 UXS1Q8NBZ7 420 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 OR52B4Q8NGK2 314 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 OR4A5Q8NH83 315 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 MARC2Q969Z3 335 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 CXorf58Q96LI9 332 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 OVOL2Q9BRP0 275 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 BET1LQ9NYM9 111 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 ANXA10Q9UJ72 324 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 BLOC1S6Q9UL45 172 aa8.88□□□□□ -0.99
LIG3-209ENST00000586435 CGB1A6NKQ9 187 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 NOTOA8MTQ0 251 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 IGHV3-23P01764 117 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 C8orf88P0DMB2 117 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 HLA-GP17693 338 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 ELLP55199 621 aaPredicted RBP8.87□□□□□ -0.99
LIG3-209ENST00000586435 TIMM50Q3ZCQ8 353 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 C22orf42Q6IC83 251 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 WFDC3Q8IUB2 231 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 NUDCD2Q8WVJ2 157 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 AIFM2Q9BRQ8 373 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 TAS2R8Q9NYW2 309 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 SPATA2Q9UM82 520 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 TP53TG1Q9Y2A0 90 aa8.87□□□□□ -0.99
LIG3-209ENST00000586435 ZNF320A2RRD8 509 aa8.86□□□□□ -0.99
LIG3-209ENST00000586435 TMEM235A6NFC5 223 aa8.86□□□□□ -0.99
LIG3-209ENST00000586435 RBFOX2O43251 390 aaKnown RBP eCLIP8.86□□□□□ -0.99
LIG3-209ENST00000586435 FGF2P09038 288 aa8.86□□□□□ -0.99
LIG3-209ENST00000586435 FGF9P31371 208 aaPredicted RBP8.86□□□□□ -0.99
LIG3-209ENST00000586435 GNG2P59768 71 aa8.86□□□□□ -0.99
LIG3-209ENST00000586435 POU2AF1Q16633 256 aa8.86□□□□□ -0.99
LIG3-209ENST00000586435 BTNL8Q6UX41 500 aa8.86□□□□□ -0.99
LIG3-209ENST00000586435 ZBTB34Q8NCN2 500 aa8.86□□□□□ -0.99
LIG3-209ENST00000586435 SRSF8Q9BRL6 282 aaKnown RBP8.86□□□□□ -0.99
LIG3-209ENST00000586435 MRPL27Q9P0M9 148 aaKnown RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 144.2 ms