RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IGLV2-14P01704 120 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 EIF4EP06730 217 aaKnown RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 SAA1P0DJI8 122 aaPredicted RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 SMIM18P0DKX4 95 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 S100GP29377 79 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 INSL3P51460 131 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 RPL30P62888 115 aaKnown RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 EGFEM1PQ0D2K5 195 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 PJVKQ0ZLH3 352 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 KIAA0141Q14154 515 aaPredicted RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 DEFB121Q5J5C9 76 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 AADACL3Q5VUY0 350 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 GPR107Q5VW38 600 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 IDO2Q6ZQW0 420 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 SNX29P2Q8IUI4 249 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 SPAG16Q8N0X2 631 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 GIMAP1Q8WWP7 306 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 SRSF12Q8WXF0 261 aaKnown RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 SNAPC3Q92966 411 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 OR2A7Q96R45 310 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 SPIN2AQ99865 258 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 SPIN2BQ9BPZ2 258 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 ZNF2Q9BSG1 426 aaPredicted RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 ZNF430Q9H8G1 570 aaPredicted RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 SCPEP1Q9HB40 452 aa6.28□□□□□ -1.4
VPS53-214ENST00000572607 EPPK1P58107 5090 aaKnown RBP6.28□□□□□ -1.4
VPS53-214ENST00000572607 BIRC6Q9NR09 4857 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 SULT1C2O00338 296 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 HPGDSO60760 199 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 SAP30O75446 220 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 PMP2P02689 132 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 HSPB1P04792 205 aaKnown RBP6.27□□□□□ -1.41
VPS53-214ENST00000572607 APELAP0DMC3 54 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 ZNF182P17025 639 aaPredicted RBP6.27□□□□□ -1.41
VPS53-214ENST00000572607 ELK1P19419 428 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 ZP3P21754 424 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 HLA-DMAP28067 261 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 RCVRNP35243 200 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 MAS1LP35410 378 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 ECI1P42126 302 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 RFX2P48378 723 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 KRTAP10-11P60412 298 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 TSPAN5P62079 268 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 DYRK1AQ13627 763 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 ZNF429Q86V71 674 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 SLC25A42Q86VD7 318 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 CMTM1Q8IZ96 169 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 OR6F1Q8NGZ6 308 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 OR4A5Q8NH83 315 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 CD300LFQ8TDQ1 290 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 C15orf40Q8WUR7 153 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 USMG5Q96IX5 58 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 RHOVQ96L33 236 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 TINAGL1Q9GZM7 467 aaPredicted RBP6.27□□□□□ -1.41
VPS53-214ENST00000572607 ALX4Q9H161 411 aaPredicted RBP6.27□□□□□ -1.41
VPS53-214ENST00000572607 RANGRFQ9HD47 186 aaPredicted RBP6.27□□□□□ -1.41
VPS53-214ENST00000572607 HRASLSQ9HDD0 168 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 ADAM30Q9UKF2 790 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 ANAPC10Q9UM13 185 aa6.27□□□□□ -1.41
VPS53-214ENST00000572607 NOTCH3Q9UM47 2321 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 IGHV4OR15-8A0A075B7B6 117 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 A0A087WW49 117 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 DBX1A6NMT0 343 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 K7EIL1 84 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 RBFOX2O43251 390 aaKnown RBP eCLIP6.26□□□□□ -1.41
VPS53-214ENST00000572607 KBTBD11O94819 623 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 BRI3O95415 125 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 DHFRP00374 187 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 HPRT1P00492 218 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 OR9G9P0C7N8 305 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 NQO2P16083 231 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 NAT1P18440 290 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 HRH1P35367 487 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 RPL27AP46776 148 aaKnown RBP6.26□□□□□ -1.41
VPS53-214ENST00000572607 SLURP1P55000 103 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 TAS2R31P59538 309 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 ERVK-16P61578 105 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 SSBP2P81877 361 aaPredicted RBP6.26□□□□□ -1.41
VPS53-214ENST00000572607 EIF4EBP1Q13541 118 aaPredicted RBP6.26□□□□□ -1.41
VPS53-214ENST00000572607 CTF1Q16619 201 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 TATDN3Q17R31 274 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 LPCAT3Q6P1A2 487 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 ZNF818PQ6ZRF7 136 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 SSX9Q7RTT3 188 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 CLVS1Q8IUQ0 354 aaPredicted RBP6.26□□□□□ -1.41
VPS53-214ENST00000572607 VKORC1L1Q8N0U8 176 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 OR51H1Q8NH63 302 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 TMEM167AQ8TBQ9 72 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 GPX8Q8TED1 209 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 DCUN1D4Q92564 292 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 MOB3AQ96BX8 217 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 FYTTD1Q96QD9 318 aaKnown RBP6.26□□□□□ -1.41
VPS53-214ENST00000572607 OR4C12Q96R67 309 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 ELOVL1Q9BW60 279 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 NAA50Q9GZZ1 169 aaKnown RBP6.26□□□□□ -1.41
VPS53-214ENST00000572607 EXTL2Q9UBQ6 330 aa6.26□□□□□ -1.41
VPS53-214ENST00000572607 WI2-2373I1.2A0A1W2PRP0 233 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 ANKRD34BA5PLL1 514 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 FAM223BA6NKX1 122 aa6.25□□□□□ -1.41
VPS53-214ENST00000572607 GPR31O00270 319 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms