RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SELLP14151 372 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 FAM201AQ5SY85 155 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 RPRMLQ8N4K4 120 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 LEAP2Q969E1 77 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 OR5B12Q96R08 314 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 FAM215AQ9Y5M1 114 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 CRYAAP02489 173 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 KIR2DS2P43631 304 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 CT45A1Q5HYN5 189 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 IGF2-ASQ6U949 168 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 CT45A3Q8NHU0 189 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 MGST2Q99735 147 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 MS4A5Q9H3V2 200 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 PITPNC1Q9UKF7 332 aa18.79■□□□□ 0.6
VPS53-211ENST00000571805 EP300Q09472 2414 aaPredicted RBP18.79■□□□□ 0.6
VPS53-211ENST00000571805 IGLV3-9A0A075B6K5 115 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 HRASP01112 189 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 GNB1P62873 340 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 PATZ1Q9HBE1 687 aaKnown RBP18.78■□□□□ 0.6
VPS53-211ENST00000571805 TCF19Q9Y242 345 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 FABP4P15090 132 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 VHLLQ6RSH7 139 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 ZNF383Q8NA42 475 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 FAM222BQ8WU58 562 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 C1orf159Q96HA4 380 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 GFOD1Q9NXC2 390 aa18.78■□□□□ 0.6
VPS53-211ENST00000571805 A0A1W2PPV4 95 aa18.77■□□□□ 0.6
VPS53-211ENST00000571805 PDE6DO43924 150 aa18.77■□□□□ 0.6
VPS53-211ENST00000571805 ATP5G3P48201 142 aa18.77■□□□□ 0.6
VPS53-211ENST00000571805 RAB7AP51149 207 aa18.77■□□□□ 0.6
VPS53-211ENST00000571805 C3orf36Q3SXR2 165 aa18.77■□□□□ 0.6
VPS53-211ENST00000571805 PCGF1Q9BSM1 259 aa18.77■□□□□ 0.6
VPS53-211ENST00000571805 GGTLC1Q9BX51 225 aa18.77■□□□□ 0.6
VPS53-211ENST00000571805 OR4S2Q8NH73 311 aa18.77■□□□□ 0.6
VPS53-211ENST00000571805 BOD1L1Q8NFC6 3051 aa18.77■□□□□ 0.59
VPS53-211ENST00000571805 TRBV23-1A0A0A0MS06 115 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 TRGV8A0A0C4DH27 118 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 GATA4P43694 442 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 UBE2G2P60604 165 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 DUX4L9Q6RFH8 374 aaPredicted RBP18.76■□□□□ 0.59
VPS53-211ENST00000571805 KBTBD11-OT1A0A1B0GTJ5 212 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 PPP5D1E7EU14 171 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 GGCTO75223 188 aaKnown RBP18.76■□□□□ 0.59
VPS53-211ENST00000571805 BMP5P22003 454 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 IGFL3Q6UXB1 125 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 HIST1H2BLQ99880 126 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 KCNIP2Q9NS61 270 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 LSM4Q9Y4Z0 139 aaKnown RBP18.76■□□□□ 0.59
VPS53-211ENST00000571805 PXMP4Q9Y6I8 212 aa18.76■□□□□ 0.59
VPS53-211ENST00000571805 SAA2-SAA4A0A096LPE2 208 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 C15orf61A6NNL5 157 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 SAA2P0DJI9 122 aaPredicted RBP18.75■□□□□ 0.59
VPS53-211ENST00000571805 CLEC12BQ2HXU8 276 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 MIC13Q5XKP0 118 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 LINC01551Q86U37 167 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 SDSLQ96GA7 329 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 TMPRSS2O15393 492 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 STAG3L2P0CL84 134 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 STAG3L3P0CL85 134 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 FAM209BQ5JX69 171 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 CST9LP1Q5W188 147 aa18.75■□□□□ 0.59
VPS53-211ENST00000571805 ZNF436-AS1Q8NC38 126 aaPredicted RBP18.75■□□□□ 0.59
VPS53-211ENST00000571805 TANC2Q9HCD6 1990 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 A0A1W2PPQ1 181 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 NDUFB4O95168 129 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 HIST1H1BP16401 226 aaKnown RBP18.74■□□□□ 0.59
VPS53-211ENST00000571805 SRP14P37108 136 aaKnown RBP18.74■□□□□ 0.59
VPS53-211ENST00000571805 TMEM183AQ8IXX5 376 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 OR2T10Q8NGZ9 312 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 RHOVQ96L33 236 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 PRDM13Q9H4Q3 707 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 GCM1Q9NP62 436 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 RD3LP0DJH9 198 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 OR4A47Q6IF82 309 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 TCF23Q7RTU1 214 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 DERL1Q9BUN8 251 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 NPVFQ9HCQ7 196 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 TMEM14BQ9NUH8 114 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 RNF7Q9UBF6 113 aa18.74■□□□□ 0.59
VPS53-211ENST00000571805 DMXL1Q9Y485 3027 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 ZNF729A6NN14 1252 aaPredicted RBP18.73■□□□□ 0.59
VPS53-211ENST00000571805 ARL14EPLP0DKL9 152 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 FAM3BP58499 235 aaPredicted RBP18.73■□□□□ 0.59
VPS53-211ENST00000571805 DNLZQ5SXM8 178 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 STUMQ69YW2 141 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 ZNF439Q8NDP4 499 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 OR5T1Q8NG75 326 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 PACRGQ96M98 296 aaPredicted RBP18.73■□□□□ 0.59
VPS53-211ENST00000571805 FOXA2Q9Y261 457 aaPredicted RBP18.73■□□□□ 0.59
VPS53-211ENST00000571805 F6UZH7 168 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 TYMSP04818 313 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 THBS3P49746 956 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 ARSJQ5FYB0 599 aaPredicted RBP18.73■□□□□ 0.59
VPS53-211ENST00000571805 C1orf185Q5T7R7 199 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 RAB9BQ9NP90 201 aa18.73■□□□□ 0.59
VPS53-211ENST00000571805 TTC28Q96AY4 2481 aa18.72■□□□□ 0.59
VPS53-211ENST00000571805 CHRNA7P36544 502 aa18.72■□□□□ 0.59
VPS53-211ENST00000571805 HSPE1P61604 102 aaKnown RBP18.72■□□□□ 0.59
VPS53-211ENST00000571805 COA6Q5JTJ3 125 aaKnown RBP18.72■□□□□ 0.59
VPS53-211ENST00000571805 C22orf34Q6ZV56 151 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms