RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 MYOZ3Q8TDC0 251 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 DGCR14Q96DF8 476 aaKnown RBP10.15□□□□□ -0.78
CLK3-224ENST00000568605 RSRP1Q9BUV0 290 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 GPR61Q9BZJ8 451 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 HRASLSQ9HDD0 168 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 SLC2A9Q9NRM0 540 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 ZNF355PQ9NSJ1 428 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 FAM212BQ9NTI7 297 aaPredicted RBP10.15□□□□□ -0.78
CLK3-224ENST00000568605 BET1LQ9NYM9 111 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 VSIG4Q9Y279 399 aa10.15□□□□□ -0.78
CLK3-224ENST00000568605 PGLYRP1O75594 196 aaPredicted RBP10.14□□□□□ -0.79
CLK3-224ENST00000568605 DUS4LO95620 317 aaKnown RBP10.14□□□□□ -0.79
CLK3-224ENST00000568605 PTBP1P26599 531 aaKnown RBP eCLIP10.14□□□□□ -0.79
CLK3-224ENST00000568605 FAUP35544 74 aaKnown RBP10.14□□□□□ -0.79
CLK3-224ENST00000568605 RAB9AP51151 201 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 TPPP2P59282 170 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 RPL8P62917 257 aaKnown RBP10.14□□□□□ -0.79
CLK3-224ENST00000568605 POU2AF1Q16633 256 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 SCGB2B2Q4G0G5 96 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 OR4A47Q6IF82 309 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 LCNL1Q6ZST4 164 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 SSX9Q7RTT3 188 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 LHFPL1Q86WI0 220 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 VKORC1L1Q8N0U8 176 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 PUSL1Q8N0Z8 303 aaKnown RBP10.14□□□□□ -0.79
CLK3-224ENST00000568605 ZFAND1Q8TCF1 268 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 PRRT1Q99946 306 aa10.14□□□□□ -0.79
CLK3-224ENST00000568605 NOTCH1P46531 2555 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 DPPA5A6NC42 116 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 MARCH11A6NNE9 402 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 SOX15O60248 233 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 S1PR2O95136 353 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 TRGV3P03979 118 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 FGF2P09038 288 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 EGR2P11161 476 aaPredicted RBP10.13□□□□□ -0.79
CLK3-224ENST00000568605 RPL27AP46776 148 aaKnown RBP10.13□□□□□ -0.79
CLK3-224ENST00000568605 BRWD1-AS2P59051 145 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 AP3S2P59780 193 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 SSBP2P81877 361 aaPredicted RBP10.13□□□□□ -0.79
CLK3-224ENST00000568605 TBC1D26Q86UD7 250 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 SLC25A42Q86VD7 318 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 ZNF491Q8N8L2 437 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 TERB2Q8NHR7 220 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 RCC1LQ96I51 464 aaKnown RBP10.13□□□□□ -0.79
CLK3-224ENST00000568605 MCRIP2Q9BUT9 160 aaKnown RBP10.13□□□□□ -0.79
CLK3-224ENST00000568605 TMEM140Q9NV12 185 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 COA4Q9NYJ1 87 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 COPZ2Q9P299 210 aa10.13□□□□□ -0.79
CLK3-224ENST00000568605 C14orf166Q9Y224 244 aaKnown RBP10.13□□□□□ -0.79
CLK3-224ENST00000568605 CMYA5Q8N3K9 4069 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 A0A0G2JLM5 398 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 ANKRD20A5PA0PJZ0 165 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 CCL24O00175 119 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 DHFRP00374 187 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 OR8U8P0C7N1 319 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 OR9G9P0C7N8 305 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 HLA-GP17693 338 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 PIGPP57054 158 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 RAB25P57735 213 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 RND3P61587 244 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 RUNX1Q01196 453 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 SURF2Q15527 256 aaPredicted RBP10.12□□□□□ -0.79
CLK3-224ENST00000568605 DEFB136Q30KP8 78 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 PYDC2Q56P42 97 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 THOC7Q6I9Y2 204 aaKnown RBP10.12□□□□□ -0.79
CLK3-224ENST00000568605 ETV3LQ6ZN32 361 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 C18orf65Q6ZTR6 163 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 LINC00482Q8N8I6 264 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 OR4D10Q8NGI6 311 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 OR4C16Q8NGL9 310 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 DEDD2Q8WXF8 326 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 DPF1Q92782 380 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 COMMD5Q9GZQ3 224 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 KLK15Q9H2R5 256 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 SCP2D1Q9UJQ7 156 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 NOTCH3Q9UM47 2321 aa10.12□□□□□ -0.79
CLK3-224ENST00000568605 C13orf42A0A1B0GVH6 325 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 MSGN1A6NI15 193 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 H0Y980 276 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 B3GALNT1O75752 331 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 ATG12O94817 140 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 BRI3O95415 125 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 SERPINE2P07093 398 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 LGALS1P09382 135 aaKnown RBP10.11□□□□□ -0.79
CLK3-224ENST00000568605 RPA2P15927 270 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 LPAR6P43657 344 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 ZNF616Q08AN1 781 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 MRGPRG-AS1Q2M3A8 158 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 FAAP20Q6NZ36 180 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 MRPL41Q8IXM3 137 aaKnown RBP10.11□□□□□ -0.79
CLK3-224ENST00000568605 Q8N402 240 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 OR5T1Q8NG75 326 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 OR13C8Q8NGS7 320 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 RAX2Q96IS3 184 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 MS4A10Q96PG2 267 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 SCGB3A2Q96PL1 93 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 P2RX4Q99571 388 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 TSC22D3Q99576 134 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 SOSTQ9BQB4 213 aa10.11□□□□□ -0.79
CLK3-224ENST00000568605 SLC2A8Q9NY64 477 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms