RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 NCS1P62166 190 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 RPL30P62888 115 aaKnown RBP11.27□□□□□ -0.61
CLN3-236ENST00000568558 ARL6IP1Q15041 203 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 DYNLRB2Q8TF09 96 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 KCTD12Q96CX2 325 aaKnown RBP11.27□□□□□ -0.61
CLN3-236ENST00000568558 FAM110AQ9BQ89 295 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 DCUN1D5Q9BTE7 237 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 NAA50Q9GZZ1 169 aaKnown RBP11.27□□□□□ -0.61
CLN3-236ENST00000568558 RHBDL2Q9NX52 303 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 SLC2A8Q9NY64 477 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 OR2W1Q9Y3N9 320 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 DMRT1Q9Y5R6 373 aa11.27□□□□□ -0.61
CLN3-236ENST00000568558 HMX3A6NHT5 357 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 PPP5D1E7EU14 171 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 IGLV2-14P01704 120 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 HLA-DQB1P01920 261 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 EDN2P20800 178 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 DEFB114Q30KQ6 69 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 C15orf32Q32M92 178 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 CDNFQ49AH0 187 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 OR2B11Q5JQS5 317 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 FAM209BQ5JX69 171 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 SLC25A42Q86VD7 318 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 DEFB125Q8N687 156 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 WFDC10AQ9H1F0 79 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 ZC4H2Q9NQZ6 224 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 ZNF257Q9Y2Q1 563 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 MRPS7Q9Y2R9 242 aaKnown RBP11.26□□□□□ -0.61
CLN3-236ENST00000568558 RBMX2Q9Y388 322 aaKnown RBP11.26□□□□□ -0.61
CLN3-236ENST00000568558 PRELID3BQ9Y3B1 194 aa11.26□□□□□ -0.61
CLN3-236ENST00000568558 RBMY1BA6NDE4 496 aaKnown RBP11.25□□□□□ -0.61
CLN3-236ENST00000568558 RBMY1EA6NEQ0 496 aaKnown RBP11.25□□□□□ -0.61
CLN3-236ENST00000568558 TMEM235A6NFC5 223 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 C2orf70A6NJV1 201 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 TEX22C9J3V5 150 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 SLC22A5O76082 557 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 KBTBD11O94819 623 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 CTXN2P0C2S0 81 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 RBMY1DP0C7P1 496 aaKnown RBP11.25□□□□□ -0.61
CLN3-236ENST00000568558 FOLR2P14207 255 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 NFYAP23511 347 aaPredicted RBP11.25□□□□□ -0.61
CLN3-236ENST00000568558 KIR2DS2P43631 304 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 VBP1P61758 197 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 VKORC1L1Q8N0U8 176 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 NUDCD2Q8WVJ2 157 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 ST6GALNAC5Q9BVH7 336 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 ETV7Q9Y603 341 aa11.25□□□□□ -0.61
CLN3-236ENST00000568558 IGKV1D-13A0A0B4J2D9 117 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 NPIPB5A8MRT5 1133 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 OR11H12B2RN74 326 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 E7EUB6 86 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 SSX5O60225 188 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 GGCTO75223 188 aaKnown RBP11.24□□□□□ -0.61
CLN3-236ENST00000568558 JTBO76095 146 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 HLA-AP01891 365 aaKnown RBP11.24□□□□□ -0.61
CLN3-236ENST00000568558 IGKV1-13P0DP09 117 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 EIF4EBP1Q13541 118 aaPredicted RBP11.24□□□□□ -0.61
CLN3-236ENST00000568558 HACD4Q5VWC8 232 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 C19orf35Q6ZS72 473 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 PUSL1Q8N0Z8 303 aaKnown RBP11.24□□□□□ -0.61
CLN3-236ENST00000568558 OR4S2Q8NH73 311 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 IL17DQ8TAD2 202 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 VSTM2AQ8TAG5 236 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 TMEM167AQ8TBQ9 72 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 WDR89Q96FK6 387 aaPredicted RBP11.24□□□□□ -0.61
CLN3-236ENST00000568558 OR2A7Q96R45 310 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 MRPS26Q9BYN8 205 aaKnown RBP11.24□□□□□ -0.61
CLN3-236ENST00000568558 DCSTAMPQ9H295 470 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 SRD5A3Q9H8P0 318 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 TECRQ9NZ01 308 aaKnown RBP11.24□□□□□ -0.61
CLN3-236ENST00000568558 FBXL7Q9UJT9 491 aa11.24□□□□□ -0.61
CLN3-236ENST00000568558 LGALS9O00182 355 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 OR2C1O95371 312 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 IL6RP08887 468 aaPredicted RBP11.23□□□□□ -0.61
CLN3-236ENST00000568558 ZNF735P0CB33 412 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 RPL27AP46776 148 aaKnown RBP11.23□□□□□ -0.61
CLN3-236ENST00000568558 ALDH3B2P48448 385 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 SCAND1P57086 179 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 BRWD1-AS2P59051 145 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 GUCA2BQ16661 112 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 CNIH2Q6PI25 160 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 GPHB5Q86YW7 130 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 TCTEX1D2Q8WW35 142 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 CCDC140Q96MF4 163 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 FANCD2OSQ96PS1 177 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 HSD17B10Q99714 261 aaKnown RBP11.23□□□□□ -0.61
CLN3-236ENST00000568558 SPATA2Q9UM82 520 aa11.23□□□□□ -0.61
CLN3-236ENST00000568558 A0A1B0GW64 132 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 DPPA5A6NC42 116 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 NDUFB8O95169 186 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 CRYGCP07315 174 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 PTHLHP12272 177 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 MAS1LP35410 378 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 CTF1Q16619 201 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 GPR107Q5VW38 600 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 CACNG8Q8WXS5 425 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 SLC25A46Q96AG3 418 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 FYTTD1Q96QD9 318 aaKnown RBP11.22□□□□□ -0.61
CLN3-236ENST00000568558 SLC2A9Q9NRM0 540 aa11.22□□□□□ -0.61
CLN3-236ENST00000568558 TRAV18A0A075B6X5 111 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms