RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 FAM209BQ5JX69 171 aa12.17□□□□□ -0.46
CLN3-229ENST00000567963 ZFAND6Q6FIF0 208 aa12.17□□□□□ -0.46
CLN3-229ENST00000567963 ZNF66Q6ZN08 573 aa12.17□□□□□ -0.46
CLN3-229ENST00000567963 TMEM167AQ8TBQ9 72 aa12.17□□□□□ -0.46
CLN3-229ENST00000567963 LGALS14Q8TCE9 139 aa12.17□□□□□ -0.46
CLN3-229ENST00000567963 RHBDL2Q9NX52 303 aa12.17□□□□□ -0.46
CLN3-229ENST00000567963 NPIPB5A8MRT5 1133 aa12.16□□□□□ -0.46
CLN3-229ENST00000567963 PPP5D1E7EU14 171 aa12.16□□□□□ -0.46
CLN3-229ENST00000567963 SDC2P34741 201 aa12.16□□□□□ -0.46
CLN3-229ENST00000567963 MAS1LP35410 378 aa12.16□□□□□ -0.46
CLN3-229ENST00000567963 YTHDF1Q9BYJ9 559 aaKnown RBP12.16□□□□□ -0.46
CLN3-229ENST00000567963 SLC2A9Q9NRM0 540 aa12.16□□□□□ -0.46
CLN3-229ENST00000567963 GAR1Q9NY12 217 aaKnown RBP12.16□□□□□ -0.46
CLN3-229ENST00000567963 TAS2R8Q9NYW2 309 aa12.16□□□□□ -0.46
CLN3-229ENST00000567963 A0A1B0GW64 132 aa12.15□□□□□ -0.46
CLN3-229ENST00000567963 ZNF785A8K8V0 405 aa12.15□□□□□ -0.46
CLN3-229ENST00000567963 ZNF735P0CB33 412 aa12.15□□□□□ -0.46
CLN3-229ENST00000567963 RPL27AP46776 148 aaKnown RBP12.15□□□□□ -0.46
CLN3-229ENST00000567963 DEFB114Q30KQ6 69 aa12.15□□□□□ -0.46
CLN3-229ENST00000567963 LINC00322Q6ZN03 302 aaPredicted RBP12.15□□□□□ -0.46
CLN3-229ENST00000567963 C19orf35Q6ZS72 473 aa12.15□□□□□ -0.46
CLN3-229ENST00000567963 LAX1Q8IWV1 398 aa12.15□□□□□ -0.46
CLN3-229ENST00000567963 BEST4Q8NFU0 473 aa12.15□□□□□ -0.46
CLN3-229ENST00000567963 FYTTD1Q96QD9 318 aaKnown RBP12.15□□□□□ -0.46
CLN3-229ENST00000567963 GPHA2Q96T91 129 aa12.15□□□□□ -0.46
CLN3-229ENST00000567963 FBXL7Q9UJT9 491 aa12.15□□□□□ -0.46
CLN3-229ENST00000567963 DPPA5A6NC42 116 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 GGCTO75223 188 aaKnown RBP12.14□□□□□ -0.47
CLN3-229ENST00000567963 OR2C1O95371 312 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 HRASP01112 189 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 HLA-AP01891 365 aaKnown RBP12.14□□□□□ -0.47
CLN3-229ENST00000567963 IFNA6P05013 189 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 CRYGCP07315 174 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 KIR2DS2P43631 304 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 SCAND1P57086 179 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 CD81P60033 236 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 MXD1Q05195 221 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 GVQW1Q8N7I0 195 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 OR5H6Q8NGV6 325 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 FANCD2OSQ96PS1 177 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 NEURL2Q9BR09 285 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 RNF167Q9H6Y7 350 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 PLEKHA3Q9HB20 300 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 CCL28Q9NRJ3 127 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 TRAV18A0A075B6X5 111 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 LCE6AA0A183 80 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 C2orf70A6NJV1 201 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 LGALS9O00182 355 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 TNFSF12O43508 249 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 CLEC2LP0C7M8 214 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 PTHLHP12272 177 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 FOLR2P14207 255 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 FCGR2CP31995 323 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 ARPC4P59998 168 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 MSMO1Q15800 293 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 KLK9Q2XQG4 91 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 KCTD21Q4G0X4 260 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 SSX9Q7RTT3 188 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 GPHB5Q86YW7 130 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 DYNLRB2Q8TF09 96 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 SECTM1Q8WVN6 248 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 SLC25A38Q96DW6 304 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 SLC2A8Q9NY64 477 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 KLK9Q9UKQ9 250 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 ETV7Q9Y603 341 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 CEPT1Q9Y6K0 416 aa12.14□□□□□ -0.47
CLN3-229ENST00000567963 TPPPO94811 219 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 NDUFB8O95169 186 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 TNFAIP8O95379 198 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 DHFRP00374 187 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 IGHV3-23P01764 117 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 CD7P09564 240 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 AREGP15514 252 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 CTRB1P17538 263 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 EDN2P20800 178 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 PSMB6P28072 239 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 RPL8P62917 257 aaKnown RBP12.13□□□□□ -0.47
CLN3-229ENST00000567963 IDNKQ5T6J7 187 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 CTRB2Q6GPI1 263 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 HOGA1Q86XE5 327 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 ZBTB34Q8NCN2 500 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 OR13F1Q8NGS4 319 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 CCDC140Q96MF4 163 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 HIPK2Q9H2X6 1198 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 ZC4H2Q9NQZ6 224 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 BET1LQ9NYM9 111 aa12.13□□□□□ -0.47
CLN3-229ENST00000567963 TECRQ9NZ01 308 aaKnown RBP12.13□□□□□ -0.47
CLN3-229ENST00000567963 A0A0A6YYH2 397 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 A6NJ64 397 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 PPYP01298 95 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 ARL3P36405 182 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 OR4A47Q6IF82 309 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 ZNF773Q6PK81 442 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 CLEC19AQ6UXS0 136 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 DEFB125Q8N687 156 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 OR4A5Q8NH83 315 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 AIFM2Q9BRQ8 373 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 S4R3C0 116 aa12.12□□□□□ -0.47
CLN3-229ENST00000567963 CGB1A6NKQ9 187 aa12.11□□□□□ -0.47
CLN3-229ENST00000567963 MYOD1P15172 320 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms