RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 DCUN1D4Q92564 292 aa24.55■■□□□ 1.52
CTCF-203ENST00000566078 QTRT1Q9BXR0 403 aaKnown RBP24.55■■□□□ 1.52
CTCF-203ENST00000566078 A0A0U1RQK1 487 aa24.54■■□□□ 1.52
CTCF-203ENST00000566078 SSSCA1O60232 199 aa24.54■■□□□ 1.52
CTCF-203ENST00000566078 SNAPC5O75971 98 aa24.54■■□□□ 1.52
CTCF-203ENST00000566078 RLN2P04090 185 aa24.54■■□□□ 1.52
CTCF-203ENST00000566078 VMA21Q3ZAQ7 101 aa24.54■■□□□ 1.52
CTCF-203ENST00000566078 TNCP24821 2201 aa24.54■■□□□ 1.52
CTCF-203ENST00000566078 WRBO00258 174 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 ARPC5O15511 151 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 KBTBD11O94819 623 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 LYL1P12980 280 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 CNTFRP26992 372 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 UBE2KP61086 200 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 HES1Q14469 280 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 TSNAXQ99598 290 aaKnown RBP24.53■■□□□ 1.52
CTCF-203ENST00000566078 C15orf61A6NNL5 157 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 FAM90A26D6RGX4 464 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 UPK2O00526 184 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 SLC25A17O43808 307 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 MOSP00540 346 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 IL6RP08887 468 aaPredicted RBP24.53■■□□□ 1.52
CTCF-203ENST00000566078 ZNF546Q86UE3 836 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 VSTM2AQ8TAG5 236 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 HSPB7Q9UBY9 170 aa24.53■■□□□ 1.52
CTCF-203ENST00000566078 CSPG4Q6UVK1 2322 aa24.52■■□□□ 1.52
CTCF-203ENST00000566078 HMSDA8MTL9 139 aa24.52■■□□□ 1.52
CTCF-203ENST00000566078 BRS3P32247 399 aa24.52■■□□□ 1.52
CTCF-203ENST00000566078 OR2T10Q8NGZ9 312 aa24.52■■□□□ 1.52
CTCF-203ENST00000566078 EAF1Q96JC9 268 aaPredicted RBP24.52■■□□□ 1.52
CTCF-203ENST00000566078 RNF5Q99942 180 aa24.52■■□□□ 1.52
CTCF-203ENST00000566078 TNFRSF9Q07011 255 aa24.51■■□□□ 1.51
CTCF-203ENST00000566078 HNF4GQ14541 408 aa24.51■■□□□ 1.51
CTCF-203ENST00000566078 FBLN7Q53RD9 439 aa24.51■■□□□ 1.51
CTCF-203ENST00000566078 C9orf62Q8N4C0 152 aa24.51■■□□□ 1.51
CTCF-203ENST00000566078 FAM96BQ9Y3D0 163 aa24.51■■□□□ 1.51
CTCF-203ENST00000566078 SOX21Q9Y651 276 aaPredicted RBP24.51■■□□□ 1.51
CTCF-203ENST00000566078 PSG5Q15238 335 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 AARDQ4LEZ3 155 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 TMEM65Q6PI78 240 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 OR4A5Q8NH83 315 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 TNFSF18Q9UNG2 199 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 FOXA2Q9Y261 457 aaPredicted RBP24.5■■□□□ 1.51
CTCF-203ENST00000566078 KCNAB3O43448 404 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 FAM120AOSQ5T036 256 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 TMEM167AQ8TBQ9 72 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 RBKSQ9H477 322 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 TPSG1Q9NRR2 321 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 PRNDQ9UKY0 176 aa24.5■■□□□ 1.51
CTCF-203ENST00000566078 E5RGE8 158 aa24.49■■□□□ 1.51
CTCF-203ENST00000566078 SYNGR2O43760 224 aa24.49■■□□□ 1.51
CTCF-203ENST00000566078 PVALBP20472 110 aaPredicted RBP24.49■■□□□ 1.51
CTCF-203ENST00000566078 ZNF429Q86V71 674 aa24.49■■□□□ 1.51
CTCF-203ENST00000566078 NANPQ8TBE9 248 aa24.49■■□□□ 1.51
CTCF-203ENST00000566078 TMEM14BQ9NUH8 114 aa24.49■■□□□ 1.51
CTCF-203ENST00000566078 L7N2F9 121 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 CHST1O43916 411 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 FSHBP01225 129 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 IFNA17P01571 189 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 VAMP2P63027 116 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 EBI3Q14213 229 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 MMDQ15546 238 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 SPINK9Q5DT21 86 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 LAMTOR1Q6IAA8 161 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 TEX45Q8NA69 505 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 C11orf1Q9H5F2 150 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 NUP50Q9UKX7 468 aa24.48■■□□□ 1.51
CTCF-203ENST00000566078 NOTCH2Q04721 2471 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 MED6O75586 246 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 SPDEFO95238 335 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 FBP1P09467 338 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 FAM106CPP0CH98 169 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 IAPPP10997 89 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 TMEM11P17152 192 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 BPIFB3P59826 476 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 MEGF9Q9H1U4 602 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 METTL1Q9UBP6 276 aaKnown RBP24.47■■□□□ 1.51
CTCF-203ENST00000566078 HSPB11Q9Y547 144 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 OR51B2Q9Y5P1 312 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 BAHCC1Q9P281 2608 aa24.47■■□□□ 1.51
CTCF-203ENST00000566078 MYOD1P15172 320 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 CXCL2P19875 107 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 F2RL1P55085 397 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 RPL8P62917 257 aaKnown RBP24.46■■□□□ 1.51
CTCF-203ENST00000566078 LGALSLQ3ZCW2 172 aaPredicted RBP24.46■■□□□ 1.51
CTCF-203ENST00000566078 Q8N6K4 173 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 INO80EQ8NBZ0 244 aaPredicted RBP24.46■■□□□ 1.51
CTCF-203ENST00000566078 MFFQ9GZY8 342 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 PLXNB1O43157 2135 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 NBR2O15453 112 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 CRYGBP07316 175 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 SPCS3P61009 180 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 KRTAP1-1Q07627 177 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 OR52E5Q8NH55 327 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 ZDHHC16Q969W1 377 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 FBXL15Q9H469 300 aa24.46■■□□□ 1.51
CTCF-203ENST00000566078 ZNF430Q9H8G1 570 aaPredicted RBP24.46■■□□□ 1.51
CTCF-203ENST00000566078 ZFHX3Q15911 3703 aa24.45■■□□□ 1.5
CTCF-203ENST00000566078 CEBPZOSA8MTT3 80 aa24.45■■□□□ 1.5
CTCF-203ENST00000566078 NUP62P37198 522 aaPredicted RBP24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms