RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 GAGE2BQ13066 116 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 ZNF345Q14585 488 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 ZNF146Q15072 292 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 ZNF718Q3SXZ3 478 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 GAGE2EQ4V326 116 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 PYDC2Q56P42 97 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 LYRM7Q5U5X0 104 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 GAGE2AQ6NT46 116 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 HSD11B1LQ7Z5J1 315 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 LINC00471Q8N535 108 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 OR5D14Q8NGL3 314 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 OR8S1Q8NH09 359 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 CT55Q8WUE5 264 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 RASL10AQ92737 203 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 FRZBQ92765 325 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 PNPLA2Q96AD5 504 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 MUCL1Q96DR8 90 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 GPR21Q99679 349 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 NAA38Q9BRA0 125 aaKnown RBP4.11□□□□□ -1.75
VPS35-205ENST00000563984 WDR13Q9H1Z4 485 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 SMDT1Q9H4I9 107 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 EDA2RQ9HAV5 297 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 TMEM100Q9NV29 134 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 RBM22Q9NW64 420 aaKnown RBP eCLIP4.11□□□□□ -1.75
VPS35-205ENST00000563984 TXNL4BQ9NX01 149 aaKnown RBP4.11□□□□□ -1.75
VPS35-205ENST00000563984 RNF186Q9NXI6 227 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 GAGE2DQ9UEU5 116 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 OARD1Q9Y530 152 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 HEBP2Q9Y5Z4 205 aa4.11□□□□□ -1.75
VPS35-205ENST00000563984 EDC4Q6P2E9 1401 aaKnown RBP4.11□□□□□ -1.75
VPS35-205ENST00000563984 SHANK3Q9BYB0 1731 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 SAA2-SAA4A0A096LPE2 208 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 LOC107984640A0A0U1RRK4 108 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 TEX50A0A1B0GTY4 177 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 TEX48A0A1B0GUV7 120 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 OR4C45A6NMZ5 311 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 ZNF732B4DXR9 585 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 TMEM262E9PQX1 116 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 F5H5P2 479 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 F8W1H4 67 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 OR2A4O95047 310 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 SFT2D2O95562 160 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 CXorf1O96002 111 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 HRASP01112 189 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 KRASP01116 189 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 H1F0P07305 194 aaKnown RBP4.1□□□□□ -1.75
VPS35-205ENST00000563984 CXCL3P19876 107 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 TSPOP30536 169 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 DUTP33316 252 aaKnown RBP4.1□□□□□ -1.75
VPS35-205ENST00000563984 SDC2P34741 201 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 DRD3P35462 400 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 HINT1P49773 126 aaPredicted RBP4.1□□□□□ -1.75
VPS35-205ENST00000563984 FABP6P51161 128 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 CLDN17P56750 224 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 RPL18AQ02543 176 aaKnown RBP4.1□□□□□ -1.75
VPS35-205ENST00000563984 IHHQ14623 411 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 LCN15Q6UWW0 184 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 CLEC20AQ6ZU45 233 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 Q6ZUT4 128 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 H2AFVQ71UI9 128 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 SSX8Q7RTT4 187 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 HOGA1Q86XE5 327 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 OR2T33Q8NG76 320 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 OR10D3Q8NH80 312 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 OR1L3Q8NH93 324 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 RTN4IP1Q8WWV3 396 aaPredicted RBP4.1□□□□□ -1.75
VPS35-205ENST00000563984 EEF1AKMT3Q96AZ1 226 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 OR2A7Q96R45 310 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 RTBDNQ9BSG5 229 aaPredicted RBP4.1□□□□□ -1.75
VPS35-205ENST00000563984 APOOQ9BUR5 198 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 EMC6Q9BV81 110 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 TSSK6Q9BXA6 273 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 TMEM106BQ9NUM4 274 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 NUDT4Q9NZJ9 180 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 AK3Q9UIJ7 227 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 KLF13Q9Y2Y9 288 aaPredicted RBP4.1□□□□□ -1.75
VPS35-205ENST00000563984 OBSCNQ5VST9 7968 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 ATRNO75882 1429 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 NWD1Q149M9 1564 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 MAST1Q9Y2H9 1570 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 LRP5O75197 1615 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 IQGAP3Q86VI3 1631 aa4.1□□□□□ -1.75
VPS35-205ENST00000563984 ADAMTSL1Q8N6G6 1762 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 A0A087X0T9 212 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 TRAV19A0A0A6YYK7 116 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 OR2T8A6NH00 312 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 SPINT2O43291 252 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 TNFSF12O43508 249 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 TYROBPO43914 113 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 KLF7O75840 302 aaPredicted RBP4.09□□□□□ -1.75
VPS35-205ENST00000563984 DUS4LO95620 317 aaKnown RBP4.09□□□□□ -1.75
VPS35-205ENST00000563984 TRGC2P03986 189 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 BCL2P10415 239 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 MYOD1P15172 320 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 UBE2E1P51965 193 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 CRISP3P54108 245 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 ARL16Q0P5N6 197 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 IL15RAQ13261 267 aa4.09□□□□□ -1.75
VPS35-205ENST00000563984 C1DQ13901 141 aaKnown RBP4.09□□□□□ -1.75
VPS35-205ENST00000563984 KIAA0040Q15053 153 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms