RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 CHST1O43916 411 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 HYPMO75409 117 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 VENTXO95231 258 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 SOX14O95416 240 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 CD160O95971 181 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 CYB5AP00167 134 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 TNFP01375 233 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 IGKV5-2P06315 115 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 CRYGDP07320 174 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 PFN1P07737 140 aaKnown RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 WNT2P09544 360 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 SCTP09683 121 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 PGA4P0DJD7 388 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 PGA5P0DJD9 388 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 S100A7P31151 101 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 SFTPDP35247 375 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 ID1P41134 155 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 P2RY1P47900 373 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 STC1P52823 247 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 ARG2P78540 354 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 PSG9Q00887 426 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 ZNF92Q03936 586 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 SRYQ05066 204 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 KLRD1Q13241 179 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 MRPL23Q16540 153 aaKnown RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 LRRC75BQ2VPJ9 315 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 CLEC12AQ5QGZ9 265 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 TEX36Q5VZQ5 186 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 C12orf73Q69YU5 71 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 AMMECR1LQ6DCA0 310 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 MORN3Q6PF18 240 aaPredicted RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 PAQR6Q6TCH4 344 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 ZNF322Q6U7Q0 402 aaPredicted RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 ANKRD37Q7Z713 158 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 ZNF429Q86V71 674 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 CDC20BQ86Y33 519 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 ZNF567Q8N184 647 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 ZNF676Q8N7Q3 588 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 CDRT4Q8N9R6 151 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 Q8NBF4 154 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 OR5AR1Q8NGP9 310 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 OR1B1Q8NGR6 318 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 OR2K2Q8NGT1 345 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 VSTM2AQ8TAG5 236 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 PPP1R1CQ8WVI7 109 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 TMEM37Q8WXS4 190 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 STARD4Q96DR4 205 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 WDR34Q96EX3 536 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 C2orf48Q96LS8 159 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 S1PR3Q99500 378 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 RTBDNQ9BSG5 229 aaPredicted RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 NDFIP1Q9BT67 221 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 SNRNP25Q9BV90 132 aaKnown RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 GGTLC1Q9BX51 225 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 WDR61Q9GZS3 305 aaKnown RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 MEPEQ9NQ76 525 aaPredicted RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 CYTL1Q9NRR1 136 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 CA10Q9NS85 328 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 C1orf123Q9NWV4 160 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 KLRF1Q9NZS2 232 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 THAP10Q9P2Z0 257 aaPredicted RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 GALPQ9UBC7 116 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 TRMT112Q9UI30 125 aaKnown RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 CES1P1Q9UKY3 287 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 MOB4Q9Y3A3 225 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 RNF115Q9Y4L5 304 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 WSB1Q9Y6I7 421 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 RGPD2P0DJD1 1756 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 ARFGEF2Q9Y6D5 1785 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 AGRNO00468 2067 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 DDX60LQ5H9U9 1706 aaKnown RBP2.73□□□□□ -1.97
VPS35-203ENST00000562420 NUP188Q5SRE5 1749 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 TIAM2Q8IVF5 1701 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 DOT1LQ8TEK3 1739 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 DOCK5Q9H7D0 1870 aa2.73□□□□□ -1.97
VPS35-203ENST00000562420 TRAV36DV7A0A075B6V5 113 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 TRAV9-2A0A087WT02 112 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 A0A1B0GVY2 172 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 RBFOX3A6NFN3 312 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 LRRC30A6NM36 301 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 J3KT08 172 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 K7EP34 96 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 TAX1BP3O14907 124 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 TAPBPO15533 448 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 SYNGR1O43759 233 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 TBL1XO60907 577 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ZNF253O75346 499 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 SLC2A10O95528 541 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 MOSP00540 346 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 MT-ND6P03923 174 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ATP5G1P05496 136 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 CXCL1P09341 107 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ORM2P19652 201 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 PGCP20142 388 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 GPR183P32249 361 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ASIPP42127 132 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ATP5G3P48201 142 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 TFPI2P48307 235 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 PGFP49763 221 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 EMDP50402 254 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms