RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 RPL30P62888 115 aaKnown RBP9.46□□□□□ -0.9
LDLR-212ENST00000560467 CD83Q01151 205 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 EIF4EBP1Q13541 118 aaPredicted RBP9.46□□□□□ -0.9
LDLR-212ENST00000560467 HES1Q14469 280 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 SMCO1Q147U7 214 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 IAH1Q2TAA2 248 aaPredicted RBP9.46□□□□□ -0.9
LDLR-212ENST00000560467 VMA21Q3ZAQ7 101 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 UTF1Q5T230 341 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 LYZL2Q7Z4W2 148 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 SLC35G3Q8N808 338 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 ZNF383Q8NA42 475 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 OR5AN1Q8NGI8 311 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 OR5M8Q8NGP6 311 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 OR4A16Q8NH70 328 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 LSM10Q969L4 123 aaKnown RBP9.46□□□□□ -0.9
LDLR-212ENST00000560467 R3HDM4Q96D70 268 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 C2orf50Q96LR7 162 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 NABP2Q9BQ15 211 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 ZNF251Q9BRH9 671 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 ZNRD1Q9P1U0 126 aa9.46□□□□□ -0.9
LDLR-212ENST00000560467 H0YJW9 148 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 LY6LH3BQJ8 138 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 WRBO00258 174 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 RAMP3O60896 148 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 FBP1P09467 338 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 GIPP09681 153 aaPredicted RBP9.45□□□□□ -0.9
LDLR-212ENST00000560467 CD1BP29016 333 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 DLX1P56177 255 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 GGNBP1Q5YKI7 109 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 HIST2H2BDQ6DRA6 164 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 OR2T10Q8NGZ9 312 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 OR1S1Q8NH92 325 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 CLCC1Q96S66 551 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 RANBP3Q9H6Z4 567 aaPredicted RBP9.45□□□□□ -0.9
LDLR-212ENST00000560467 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.45□□□□□ -0.9
LDLR-212ENST00000560467 FKBP11Q9NYL4 201 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 PRR13Q9NZ81 148 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 KIAA1456Q9P272 454 aa9.45□□□□□ -0.9
LDLR-212ENST00000560467 BTBD17A6NE02 478 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 DBX1A6NMT0 343 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 MARCH11A6NNE9 402 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 PROP1O75360 226 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 ADAP1O75689 374 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 ACTL6BO94805 426 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 S1PR2O95136 353 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 MOSP00540 346 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 SLC25A6P12236 298 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 PVALBP20472 110 aaPredicted RBP9.44□□□□□ -0.9
LDLR-212ENST00000560467 G6PCP35575 357 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 NUP62P37198 522 aaPredicted RBP9.44□□□□□ -0.9
LDLR-212ENST00000560467 RPL15P61313 204 aaKnown RBP9.44□□□□□ -0.9
LDLR-212ENST00000560467 PLGLAQ15195 96 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 ZNF585BQ52M93 769 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 HCP5Q6MZN7 132 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 Q6ZSV7 163 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 OR4A5Q8NH83 315 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 THAP6Q8TBB0 222 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 DDB2Q92466 427 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 SEC22AQ96IW7 307 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 RHOVQ96L33 236 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 HARBI1Q96MB7 349 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 NMES1Q9C002 83 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 NBEAL2Q6ZNJ1 2754 aa9.44□□□□□ -0.9
LDLR-212ENST00000560467 FAM90A9PA6NNJ1 464 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 CCSO14618 274 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 MED6O75586 246 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 SIX6O95475 246 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 PRB2P02812 416 aaPredicted RBP9.43□□□□□ -0.9
LDLR-212ENST00000560467 IER3P46695 156 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 TMEM177Q53S58 311 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 LHFPL4Q7Z7J7 247 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 MRPL41Q8IXM3 137 aaKnown RBP9.43□□□□□ -0.9
LDLR-212ENST00000560467 PIP4P2Q8N4L2 257 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 OR11H7Q8NGC8 314 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 OR8H1Q8NGG4 311 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 C5orf30Q96GV9 206 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 DOCK11Q5JSL3 2073 aa9.43□□□□□ -0.9
LDLR-212ENST00000560467 IGHV3-72A0A0B4J1Y9 119 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 G3V4G9 280 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 ST8SIA3O43173 380 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 OR2A4O95047 310 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 LY86O95711 162 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 SCGB1D2O95969 90 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 HNRNPCP07910 306 aaKnown RBP eCLIP9.42□□□□□ -0.92e-8■■■□□ 15.5
LDLR-212ENST00000560467 CXCL3P19876 107 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 PSMB6P28072 239 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 S100A10P60903 97 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 C2orf68Q2NKX9 166 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 ZFP69Q49AA0 526 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 SSX9Q7RTT3 188 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 THNSL2Q86YJ6 484 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 OR2T35Q8NGX2 323 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 OR2A7Q96R45 310 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 RANGRFQ9HD47 186 aaPredicted RBP9.42□□□□□ -0.9
LDLR-212ENST00000560467 ENY2Q9NPA8 101 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 COA4Q9NYJ1 87 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 PITPNC1Q9UKF7 332 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 PRNDQ9UKY0 176 aa9.42□□□□□ -0.9
LDLR-212ENST00000560467 A0A1W2PPI3 338 aa9.41□□□□□ -0.9
LDLR-212ENST00000560467 NCBP2LA6PVI3 153 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms