RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 EPHA8P29322 1005 aaPredicted RBP9.48□□□□□ -0.89
LDLR-208ENST00000558518 GPR12P47775 334 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 RPL39P5Q59GN2 51 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 COL5A1-AS1Q5SY13 56 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 OR2Y1Q8NGV0 311 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 BORCS7Q96B45 105 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 ZNF703Q9H7S9 590 aaPredicted RBP9.48□□□□□ -0.89
LDLR-208ENST00000558518 GNB4Q9HAV0 340 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 YTHDF2Q9Y5A9 579 aaKnown RBP9.48□□□□□ -0.89
LDLR-208ENST00000558518 TMEM210A6NLX4 147 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 PDE6DO43924 150 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 SFTPCP11686 197 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 RPL15P61313 204 aaKnown RBP9.48□□□□□ -0.89
LDLR-208ENST00000558518 ABHD17BQ5VST6 288 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 VHLLQ6RSH7 139 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 RCHY1Q96PM5 261 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 HIPK2Q9H2X6 1198 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 PRDM6Q9NQX0 595 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 DUSP13Q9UII6 198 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 MRPS17Q9Y2R5 130 aaKnown RBP9.48□□□□□ -0.89
LDLR-208ENST00000558518 NCKAP5O14513 1909 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 PCNX2A6NKB5 2137 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 J3QT63 122 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 GPR6P46095 362 aaPredicted RBP9.48□□□□□ -0.89
LDLR-208ENST00000558518 UBE2NP61088 152 aaKnown RBP9.48□□□□□ -0.89
LDLR-208ENST00000558518 VAMP3Q15836 100 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 RPEL1Q2QD12 228 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 STPG4Q8N801 248 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 DNASE2BQ8WZ79 361 aa9.48□□□□□ -0.89
LDLR-208ENST00000558518 DKK1O94907 266 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 Q0VFX4 171 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 SP5Q6BEB4 398 aaPredicted RBP9.47□□□□□ -0.89
LDLR-208ENST00000558518 MOB3BQ86TA1 216 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 AGMATQ9BSE5 352 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 MCRIP2Q9BUT9 160 aaKnown RBP9.47□□□□□ -0.89
LDLR-208ENST00000558518 PHF7Q9BWX1 381 aaPredicted RBP9.47□□□□□ -0.89
LDLR-208ENST00000558518 IGHV3OR15-7A0A075B7D8 119 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 TOX4O94842 621 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 GNG4P50150 75 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 ERVK-16P61578 105 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 COA6Q5JTJ3 125 aaKnown RBP9.47□□□□□ -0.89
LDLR-208ENST00000558518 RNASEKQ6P5S7 137 aaKnown RBP9.47□□□□□ -0.89
LDLR-208ENST00000558518 DEFB108BQ8NET1 73 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 SLC25A40Q8TBP6 338 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 ENY2Q9NPA8 101 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 NRN1Q9NPD7 142 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 LOXL2Q9Y4K0 774 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 SPTA1P02549 2419 aa9.47□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A10PA6NDY2 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A18PA6NE21 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A16PA6NEW6 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A20PA6NIJ5 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A8PA6NJQ4 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A7PA6NKC0 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A22PA8MWA6 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A12PA8MX19 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A5PA8MXJ8 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A23PA8MXZ1 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 TNFSF13O75888 250 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A15PP0C7V4 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A13PP0C7W8 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A14PP0C7W9 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 FAM90A24PP0C7X0 464 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 RANP62826 216 aaKnown RBP9.46□□□□□ -0.89
LDLR-208ENST00000558518 LCN2P80188 198 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 DNLZQ5SXM8 178 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 WDR86Q86TI4 376 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 CARFQ8N187 725 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 ZNF645Q8N7E2 425 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 DUSP23Q9BVJ7 150 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 TECRQ9NZ01 308 aaKnown RBP9.46□□□□□ -0.89
LDLR-208ENST00000558518 HSPB7Q9UBY9 170 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 BOKQ9UMX3 212 aaPredicted RBP9.46□□□□□ -0.89
LDLR-208ENST00000558518 WIPI2Q9Y4P8 454 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 SPTBN1Q01082 2364 aaKnown RBP9.46□□□□□ -0.89
LDLR-208ENST00000558518 TMEM30CPA0ZSE6 113 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 RELBQ01201 579 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 PMCHL1Q16048 86 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 TPTE2P1Q5T6R2 138 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 OR13A1Q8NGR1 328 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 POM121L2Q96KW2 1035 aa9.46□□□□□ -0.89
LDLR-208ENST00000558518 SSBP4Q9BWG4 385 aaPredicted RBP9.46□□□□□ -0.89
LDLR-208ENST00000558518 M0QZK8 103 aa9.46□□□□□ -0.9
LDLR-208ENST00000558518 VENTXO95231 258 aa9.46□□□□□ -0.9
LDLR-208ENST00000558518 PLAUP00749 431 aa9.46□□□□□ -0.9
LDLR-208ENST00000558518 WNT2P09544 360 aa9.46□□□□□ -0.9
LDLR-208ENST00000558518 CD24P25063 80 aa9.46□□□□□ -0.9
LDLR-208ENST00000558518 RIPPLY2Q5TAB7 128 aa9.46□□□□□ -0.9
LDLR-208ENST00000558518 RNF138Q8WVD3 245 aa9.46□□□□□ -0.9
LDLR-208ENST00000558518 C5orf30Q96GV9 206 aa9.46□□□□□ -0.9
LDLR-208ENST00000558518 TP53TG3Q9ULZ0 132 aa9.46□□□□□ -0.9
LDLR-208ENST00000558518 OR5B21A6NL26 309 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 TIMM8AO60220 97 aaPredicted RBP9.45□□□□□ -0.9
LDLR-208ENST00000558518 LHX2P50458 406 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 ATP6V1FQ16864 119 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 CENPWQ5EE01 88 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 Q6P435 159 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 SPSB4Q96A44 273 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 SLC35E1Q96K37 410 aa9.45□□□□□ -0.9
LDLR-208ENST00000558518 LINC00479Q96M42 142 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms