RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 MRGPRG-AS1Q2M3A8 158 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 OR5T1Q8NG75 326 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 MRAPQ8TCY5 172 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 USMG5Q96IX5 58 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 TINAGL1Q9GZM7 467 aaPredicted RBP16■□□□□ 0.15
CCDC88C-210ENST00000555995 BET1LQ9NYM9 111 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 TNCP24821 2201 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 GPR31O00270 319 aa15.99■□□□□ 0.15
CCDC88C-210ENST00000555995 HSPB1P04792 205 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-210ENST00000555995 FGF2P09038 288 aa15.99■□□□□ 0.15
CCDC88C-210ENST00000555995 GNRHRP30968 328 aa15.99■□□□□ 0.15
CCDC88C-210ENST00000555995 LYSMD2Q8IV50 215 aa15.99■□□□□ 0.15
CCDC88C-210ENST00000555995 OR51H1Q8NH63 302 aa15.99■□□□□ 0.15
CCDC88C-210ENST00000555995 CASTOR1Q8WTX7 329 aa15.99■□□□□ 0.15
CCDC88C-210ENST00000555995 PLEKHA2Q9HB19 425 aa15.99■□□□□ 0.15
CCDC88C-210ENST00000555995 SCOCQ9UIL1 159 aa15.99■□□□□ 0.15
CCDC88C-210ENST00000555995 SEC14L6B5MCN3 397 aa15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 RAMP3O60896 148 aa15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 RPL27AP46776 148 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 BRWD1-AS2P59051 145 aa15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 SPCS2Q15005 226 aa15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 POU2AF1Q16633 256 aa15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 FAM209BQ5JX69 171 aa15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 VAX1Q5SQQ9 334 aa15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 ASPHD1Q5U4P2 390 aa15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 FXYD6Q9H0Q3 95 aa15.98■□□□□ 0.15
CCDC88C-210ENST00000555995 FAM223BA6NKX1 122 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 OVOL1O14753 267 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 IGHV3-11P01762 117 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 PRB2P02812 416 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 IFNA6P05013 189 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 ZP3P21754 424 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 ERVK-16P61578 105 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 RPL8P62917 257 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 DGCR2P98153 550 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 SSBP1Q04837 148 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 RNASE10Q5GAN6 216 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 FAM223AQ8IWN6 122 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 VKORC1L1Q8N0U8 176 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 ADAD2Q8NCV1 583 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 FCAMRQ8WWV6 532 aa15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 RANGRFQ9HD47 186 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 FAM212BQ9NTI7 297 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-210ENST00000555995 DPPA5A6NC42 116 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 DHFRP00374 187 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 RLN1P04808 185 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 F2RP25116 425 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 HOXD3P31249 432 aaPredicted RBP15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 UCP3P55916 312 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 OR4A47Q6IF82 309 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 SSX9Q7RTT3 188 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 SLC38A6Q8IZM9 456 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 ARRDC1Q8N5I2 433 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 TTC9CQ8N5M4 171 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 DYNC2LI1Q8TCX1 351 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 GPHA2Q96T91 129 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 HRASLSQ9HDD0 168 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 MTFP1Q9UDX5 166 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 ZNF257Q9Y2Q1 563 aa15.96■□□□□ 0.15
CCDC88C-210ENST00000555995 GABARAPH6UMI1 98 aa15.95■□□□□ 0.14
CCDC88C-210ENST00000555995 PGLYRP1O75594 196 aaPredicted RBP15.95■□□□□ 0.14
CCDC88C-210ENST00000555995 HLA-GP17693 338 aa15.95■□□□□ 0.14
CCDC88C-210ENST00000555995 THOC7Q6I9Y2 204 aaKnown RBP15.95■□□□□ 0.14
CCDC88C-210ENST00000555995 ZNF429Q86V71 674 aa15.95■□□□□ 0.14
CCDC88C-210ENST00000555995 DMBX1Q8NFW5 382 aa15.95■□□□□ 0.14
CCDC88C-210ENST00000555995 ALX4Q9H161 411 aaPredicted RBP15.95■□□□□ 0.14
CCDC88C-210ENST00000555995 PRKDCP78527 4128 aaKnown RBP15.95■□□□□ 0.14
CCDC88C-210ENST00000555995 IGHV4OR15-8A0A075B7B6 117 aa15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 A0A087WW49 117 aa15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 TAS2R19P59542 299 aa15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 LAX1Q8IWV1 398 aa15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 CADM3Q8N126 398 aa15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 OR52I2Q8NH67 350 aa15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 DCUN1D4Q92564 292 aa15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 ISOC1Q96CN7 298 aa15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 DGCR14Q96DF8 476 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 ZNF486Q96H40 463 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-210ENST00000555995 NPIPB5A8MRT5 1133 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 S1PR2O95136 353 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 ZNF735P0CB33 412 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 APELAP0DMC3 54 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 KRTAP10-11P60412 298 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 C10orf55Q5SWW7 151 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 SRSF8Q9BRL6 282 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 RSRP1Q9BUV0 290 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 COMMD5Q9GZQ3 224 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 MIXL1Q9H2W2 232 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 SLC2A9Q9NRM0 540 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 TMEM140Q9NV12 185 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 KLK11Q9UBX7 282 aa15.93■□□□□ 0.14
CCDC88C-210ENST00000555995 MARCH11A6NNE9 402 aa15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 H3BMQ9 156 aa15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 SLURP1P55000 103 aa15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 RNASE12Q5GAN4 147 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 ZNF343Q6P1L6 599 aa15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 TMEM229BQ8NBD8 167 aa15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 NECAP1Q8NC96 275 aa15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 DLX4Q92988 240 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 DIRAS2Q96HU8 199 aa15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 FYTTD1Q96QD9 318 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms