RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 HERV-K104P61576 105 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 KLF5Q13887 457 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 DEFB121Q5J5C9 76 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 ZNF818PQ6ZRF7 136 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 PLEKHA2Q9HB19 425 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 EHFQ9NZC4 300 aa12.32□□□□□ -0.44
CCDC88C-209ENST00000554872 MEIS3P1A6NDR6 274 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 HPRT1P00492 218 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 IL6RP08887 468 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 C10orf55Q5SWW7 151 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 VKORC1L1Q8N0U8 176 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 SPAG16Q8N0X2 631 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 NECAP1Q8NC96 275 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 OR6Q1Q8NGQ2 317 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 OR5H2Q8NGV7 314 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 AP3S1Q92572 193 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 SRSF8Q9BRL6 282 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 MRPS26Q9BYN8 205 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 SIGLEC8Q9NYZ4 499 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 COMMD9Q9P000 198 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 COMMD3Q9UBI1 195 aa12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 PEF1Q9UBV8 284 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-209ENST00000554872 SMIM31A0A1B0GVY4 71 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 MPPED1O15442 326 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 TNFSF12O43508 249 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 SAP30O75446 220 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 RBMXL2O75526 392 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 CRYGCP07315 174 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 NQO2P16083 231 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 RCVRNP35243 200 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 RPL27AP46776 148 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 ALDH3B2P48448 385 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 FXYD4P59646 89 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 RPL8P62917 257 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 ZNF45Q02386 682 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 CD69Q07108 199 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 TMEM17Q86X19 198 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 LYSMD2Q8IV50 215 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 PRR25Q96S07 402 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 ELOVL1Q9BW60 279 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 AKIP1Q9NQ31 210 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 SLC2A9Q9NRM0 540 aa12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 FAM212BQ9NTI7 297 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-209ENST00000554872 SORL1Q92673 2214 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 NHLRC4P0CG21 123 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 HLA-GP17693 338 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 ELK1P19419 428 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 RFX2P48378 723 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 RHOGP84095 191 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 GPR107Q5VW38 600 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 OR4A47Q6IF82 309 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 MZT2AQ6P582 158 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 OR6F1Q8NGZ6 308 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 OR4C12Q96R67 309 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 GPHA2Q96T91 129 aa12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 ZNF2Q9BSG1 426 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-209ENST00000554872 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 A0A1B0GW64 132 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 HPGDSO60760 199 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 IGLV1-51P01701 117 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 FCER2P06734 321 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 APELAP0DMC3 54 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 ZNF182P17025 639 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 HRH1P35367 487 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 VAX1Q5SQQ9 334 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 AADACL3Q5VUY0 350 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 THOC7Q6I9Y2 204 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 CMTM1Q8IZ96 169 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 OR9G4Q8NGQ1 327 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 NAA50Q9GZZ1 169 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 FXYD6Q9H0Q3 95 aa12.28□□□□□ -0.44
CCDC88C-209ENST00000554872 DNAH9Q9NYC9 4486 aa12.27□□□□□ -0.44
CCDC88C-209ENST00000554872 E7EUB6 86 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 PGLYRP1O75594 196 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 DHFRP00374 187 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 PMP2P02689 132 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 CTRB1P17538 263 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 F2RP25116 425 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 ATP5G2Q06055 141 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 EXOSC2Q13868 293 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 CTRB2Q6GPI1 263 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 LPCAT3Q6P1A2 487 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 IL34Q6ZMJ4 242 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 OR51H1Q8NH63 302 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 C15orf40Q8WUR7 153 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 FYTTD1Q96QD9 318 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 BCL7BQ9BQE9 202 aa12.27□□□□□ -0.45
CCDC88C-209ENST00000554872 HMX3A6NHT5 357 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 CGB1A6NKQ9 187 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 GPR31O00270 319 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 UPK2O00526 184 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 S1PR2O95136 353 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 TRBV12-3P01733 135 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 SPNP16150 400 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 HIST1H1BP16401 226 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 TBPP20226 339 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 PSMB6P28072 239 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 UCP3P55916 312 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 OR2B8PP59922 312 aa12.26□□□□□ -0.45
CCDC88C-209ENST00000554872 TATDN3Q17R31 274 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms