RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 DEFA5Q01523 94 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 EGFEM1PQ0D2K5 195 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 PJVKQ0ZLH3 352 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 ATXN7L3Q14CW9 347 aaPredicted RBP7.01□□□□□ -1.29
TDP1-208ENST00000553989 RSU1Q15404 277 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 SRSF7Q16629 238 aaKnown RBP eCLIP7.01□□□□□ -1.29
TDP1-208ENST00000553989 KRBOX4Q5JUW0 171 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 AADACL3Q5VUY0 350 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 KLHL30-AS1Q8NEE0 82 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 TMEM230Q96A57 120 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 B9D2Q9BPU9 175 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 NKX6-2Q9C056 277 aaPredicted RBP7.01□□□□□ -1.29
TDP1-208ENST00000553989 CYTL1Q9NRR1 136 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 EHFQ9NZC4 300 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 IL36GQ9NZH8 169 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 PRELID1Q9Y255 219 aa7.01□□□□□ -1.29
TDP1-208ENST00000553989 AMMECR1Q9Y4X0 333 aaPredicted RBP7.01□□□□□ -1.29
TDP1-208ENST00000553989 ODAMA1E959 279 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A10PA6NDY2 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A18PA6NE21 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A16PA6NEW6 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A20PA6NIJ5 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A7PA6NKC0 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 ZNF729A6NN14 1252 aaPredicted RBP7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A12PA8MX19 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A5PA8MXJ8 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A23PA8MXZ1 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 OOSP1A8MZH6 123 aa7□□□□□ -1.29
TDP1-208ENST00000553989 E5RGE8 158 aa7□□□□□ -1.29
TDP1-208ENST00000553989 DNASE2O00115 360 aaPredicted RBP7□□□□□ -1.29
TDP1-208ENST00000553989 HSPB6O14558 160 aa7□□□□□ -1.29
TDP1-208ENST00000553989 IGLV1-47P01700 117 aa7□□□□□ -1.29
TDP1-208ENST00000553989 IGHV3-7P01780 117 aa7□□□□□ -1.29
TDP1-208ENST00000553989 AMY1AP04745 511 aa7□□□□□ -1.29
TDP1-208ENST00000553989 SNRNP70P08621 437 aaKnown RBP7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A15PP0C7V4 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A13PP0C7W8 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A14PP0C7W9 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FAM90A24PP0C7X0 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 TMEM11P17152 192 aa7□□□□□ -1.29
TDP1-208ENST00000553989 THBS3P49746 956 aa7□□□□□ -1.29
TDP1-208ENST00000553989 RAB5CP51148 216 aa7□□□□□ -1.29
TDP1-208ENST00000553989 SRPXP78539 464 aa7□□□□□ -1.29
TDP1-208ENST00000553989 FLI1Q01543 452 aaPredicted RBP7□□□□□ -1.29
TDP1-208ENST00000553989 PDZK1IP1Q13113 114 aa7□□□□□ -1.29
TDP1-208ENST00000553989 LTC4SQ16873 150 aa7□□□□□ -1.29
TDP1-208ENST00000553989 RNF144BQ7Z419 303 aa7□□□□□ -1.29
TDP1-208ENST00000553989 LRTM2Q8N967 370 aa7□□□□□ -1.29
TDP1-208ENST00000553989 CLRN3Q8NCR9 226 aa7□□□□□ -1.29
TDP1-208ENST00000553989 OR9G1Q8NH87 305 aa7□□□□□ -1.29
TDP1-208ENST00000553989 GALNT14Q96FL9 552 aa7□□□□□ -1.29
TDP1-208ENST00000553989 SMIM8Q96KF7 97 aa7□□□□□ -1.29
TDP1-208ENST00000553989 Q96M66 194 aa7□□□□□ -1.29
TDP1-208ENST00000553989 NOL4LQ96MY1 436 aaPredicted RBP7□□□□□ -1.29
TDP1-208ENST00000553989 SPACA5Q96QH8 159 aa7□□□□□ -1.29
TDP1-208ENST00000553989 TSNAXQ99598 290 aaKnown RBP7□□□□□ -1.29
TDP1-208ENST00000553989 SEC11CQ9BY50 192 aa7□□□□□ -1.29
TDP1-208ENST00000553989 SEBOXQ9HB31 216 aaPredicted RBP7□□□□□ -1.29
TDP1-208ENST00000553989 OR6C3Q9NZP0 311 aa7□□□□□ -1.29
TDP1-208ENST00000553989 ZMAT5Q9UDW3 170 aaKnown RBP7□□□□□ -1.29
TDP1-208ENST00000553989 ANXA10Q9UJ72 324 aa7□□□□□ -1.29
TDP1-208ENST00000553989 CARHSP1Q9Y2V2 147 aaKnown RBP7□□□□□ -1.29
TDP1-208ENST00000553989 NSG2Q9Y328 171 aa7□□□□□ -1.29
TDP1-208ENST00000553989 BORCS7-ASMTA0A0B4J1R7 106 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 CRYM-AS1A6NIL9 109 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 F8W036 122 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 H0YIZ8 118 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 K7EPK0 472 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 DEGS1O15121 323 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 OR5H8P0DN80 308 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 LMO1P25800 156 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 GNG10P50151 68 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 CAV2P51636 162 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 SUPT4H1P63272 117 aaKnown RBP6.99□□□□□ -1.29
TDP1-208ENST00000553989 HNF4GQ14541 408 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 ANKRD55Q3KP44 614 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 ETV3LQ6ZN32 361 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 C18orf65Q6ZTR6 163 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 SLC35E3Q7Z769 313 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 FOXRED2Q8IWF2 684 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 SAXO1Q8IYX7 474 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 LGI3Q8N145 548 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 FAM71E2Q8N5Q1 922 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 DRAM1Q8N682 238 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 CCDC71LQ8N9Z2 235 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 OR1S2Q8NGQ3 325 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 CORO2AQ92828 525 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 NARS2Q96I59 477 aaKnown RBP6.99□□□□□ -1.29
TDP1-208ENST00000553989 DUX3Q96PT4 197 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 CMSS1Q9BQ75 279 aaKnown RBP6.99□□□□□ -1.29
TDP1-208ENST00000553989 ZNF2Q9BSG1 426 aaPredicted RBP6.99□□□□□ -1.29
TDP1-208ENST00000553989 SLC5A7Q9GZV3 580 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 PARP11Q9NR21 331 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 GSKIPQ9P0R6 139 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 LINC00527Q9UJ94 153 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 NBEAL2Q6ZNJ1 2754 aa6.99□□□□□ -1.29
TDP1-208ENST00000553989 IGKV1-12A0A0C4DH73 117 aa6.98□□□□□ -1.29
TDP1-208ENST00000553989 KBTBD11-OT1A0A1B0GTJ5 212 aa6.98□□□□□ -1.29
TDP1-208ENST00000553989 ZNF705EA8MWA4 302 aaPredicted RBP6.98□□□□□ -1.29
TDP1-208ENST00000553989 SLC33A1O00400 549 aaPredicted RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms