RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 APELAP0DMC3 54 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 GNRHRP30968 328 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 DGCR2P98153 550 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 ZNF846Q147U1 533 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 SPCS2Q15005 226 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 C10orf55Q5SWW7 151 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 MMD2Q8IY49 270 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 ADAD2Q8NCV1 583 aaKnown RBP7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 TMEM167AQ8TBQ9 72 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 S100ZQ8WXG8 99 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 MOB3AQ96BX8 217 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 OR2A7Q96R45 310 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 ZNF355PQ9NSJ1 428 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 EHFQ9NZC4 300 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 ADAM30Q9UKF2 790 aa7.91□□□□□ -1.14
CCDC88C-206ENST00000553437 A0A0G2JLM5 398 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 TEX22C9J3V5 150 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 E7EUB6 86 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 SULT1C2O00338 296 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 CREBL2O60519 120 aaPredicted RBP7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 KBTBD11O94819 623 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 IL6RP08887 468 aaPredicted RBP7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 OR9G9P0C7N8 305 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 HLA-DMAP28067 261 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 KIR2DS2P43631 304 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 TAS2R46P59540 309 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 DEFA5Q01523 94 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 Q6ZNX1 250 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 TMEM17Q86X19 198 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 SNX29P2Q8IUI4 249 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 SPAG16Q8N0X2 631 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 TTC9CQ8N5M4 171 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 OR5H2Q8NGV7 314 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 VSTM2AQ8TAG5 236 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 PHB2Q99623 299 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 SPIN2AQ99865 258 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 SPIN2BQ9BPZ2 258 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 ZNF2Q9BSG1 426 aaPredicted RBP7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 SCPEP1Q9HB40 452 aa7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 ZMAT5Q9UDW3 170 aaKnown RBP7.9□□□□□ -1.14
CCDC88C-206ENST00000553437 TRBV9A0A0B4J1U6 114 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 C13orf42A0A1B0GVH6 325 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 HMX3A6NHT5 357 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 PFDN1O60925 122 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 PGLYRP1O75594 196 aaPredicted RBP7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 ACTL6BO94805 426 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 HRASP01112 189 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 PRH1P02810 166 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 ZNF735P0CB33 412 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 HRH1P35367 487 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 MAS1LP35410 378 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 INSL3P51460 131 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 HERV-K104P61576 105 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 ZNF45Q02386 682 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 POU2AF1Q16633 256 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 DEFB121Q5J5C9 76 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 OR4A47Q6IF82 309 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 ZNF343Q6P1L6 599 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 ACSM6Q6P461 480 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 MZT2AQ6P582 158 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 SSX9Q7RTT3 188 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 AP3S1Q92572 193 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 USMG5Q96IX5 58 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 KRTAP4-8Q9BYQ9 185 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 FXYD6Q9H0Q3 95 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 RANGRFQ9HD47 186 aaPredicted RBP7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 COA4Q9NYJ1 87 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 BET1LQ9NYM9 111 aa7.89□□□□□ -1.15
CCDC88C-206ENST00000553437 TRAV3A0A0B4J244 114 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 ANKRD34BA5PLL1 514 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 CGB1A6NKQ9 187 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 S1PR2O95136 353 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 HPRT1P00492 218 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 TRBV12-3P01733 135 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 MYOD1P15172 320 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 RCVRNP35243 200 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 ECI1P42126 302 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 RPL27AP46776 148 aaKnown RBP7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 TAS2R31P59538 309 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 CATR1Q13166 79 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 KLF5Q13887 457 aaPredicted RBP7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 KLK9Q2XQG4 91 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 AADACL3Q5VUY0 350 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 ZNF429Q86V71 674 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 OR6F1Q8NGZ6 308 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 OR51H1Q8NH63 302 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 OR4A5Q8NH83 315 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 DYNC2LI1Q8TCX1 351 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 CD300LFQ8TDQ1 290 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 PRR25Q96S07 402 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 MIXL1Q9H2W2 232 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 PLEKHA2Q9HB19 425 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 AKIP1Q9NQ31 210 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 SLC2A9Q9NRM0 540 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 KLK9Q9UKQ9 250 aa7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 LSM4Q9Y4Z0 139 aaKnown RBP7.88□□□□□ -1.15
CCDC88C-206ENST00000553437 COL7A1Q02388 2944 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 hCG_2014768A0A024R1R8 64 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 NPIPB5A8MRT5 1133 aa7.87□□□□□ -1.15
CCDC88C-206ENST00000553437 FAM25AB3EWG3 89 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms