RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 APOBEC3DQ96AK3 386 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-214ENST00000552783 BTF3L4Q96K17 158 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 SLC35E1Q96K37 410 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 HINT2Q9BX68 163 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 HSPB7Q9UBY9 170 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 TNRC6AQ8NDV7 1962 aaKnown RBP4.05□□□□□ -1.76
LIMA1-214ENST00000552783 AHRRA9YTQ3 701 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 FCN1O00602 326 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 TMPRSS2O15393 492 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 P0C879 139 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 TDGF1P13385 188 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 COX5AP20674 150 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 GABRA2P47869 451 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 HINT1P49773 126 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-214ENST00000552783 FABP6P51161 128 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 CCL11P51671 97 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 SRSF7Q16629 238 aaKnown RBP eCLIP4.05□□□□□ -1.76
LIMA1-214ENST00000552783 TMEM183BQ1AE95 376 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 SPATA45Q537H7 98 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 Q6P435 159 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 BAGE3Q86Y29 109 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 BAGE2Q86Y30 109 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 C1orf159Q96HA4 380 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 PARD6GQ9BYG4 376 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-214ENST00000552783 SAMD10Q9BYL1 202 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 DUSP13Q9UII6 198 aa4.05□□□□□ -1.76
LIMA1-214ENST00000552783 TBL2Q9Y4P3 447 aaKnown RBP4.05□□□□□ -1.76
LIMA1-214ENST00000552783 LY6G6EA0A0G2JKS1 128 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 LRRC30A6NM36 301 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 LINC00473A8K010 186 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 C15orf62A8K5M9 175 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 DIRC3C9JPN6 131 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 TNFSF15O95150 251 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 SERPINA7P05543 415 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 GPX1P07203 203 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 CTXN2P0C2S0 81 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 OR5G3P0C626 314 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 PMCHP20382 165 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 KITLGP21583 273 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF83P51522 516 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 TCL1AP56279 114 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 TPPP2P59282 170 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF90Q03938 601 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 ALKBH6Q3KRA9 238 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 COL5A1-AS1Q5SY13 56 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 C1orf210Q8IVY1 113 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 VKORC1L1Q8N0U8 176 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 TPRX1Q8N7U7 411 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 OR52L2PQ8NGH6 319 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 OR10G8Q8NGN5 311 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 UHRF2Q96PU4 802 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 TMEM147Q9BVK8 224 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 SF3B5Q9BWJ5 86 aaKnown RBP4.04□□□□□ -1.76
LIMA1-214ENST00000552783 SEPSECSQ9HD40 501 aaKnown RBP4.04□□□□□ -1.76
LIMA1-214ENST00000552783 TIMM9Q9Y5J7 89 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 U3KQA8 63 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 RELNP78509 3460 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A10PA6NDY2 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A18PA6NE21 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A16PA6NEW6 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A20PA6NIJ5 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A8PA6NJQ4 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A7PA6NKC0 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A22PA8MWA6 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A12PA8MX19 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A5PA8MXJ8 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 DEFB108AA8MXU0 73 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A23PA8MXZ1 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 SNURFLB1AK76 121 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 F6UZH7 168 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 M0QZ24 198 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 CDIPTO14735 213 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 ZZEF1O43149 2961 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 OR2H2O95918 312 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A15PP0C7V4 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A13PP0C7W8 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A14PP0C7W9 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM90A24PP0C7X0 464 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 IGLC2P0DOY2 106 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 IGLC3P0DOY3 106 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 GFRA1P56159 465 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 MRPL49Q13405 166 aaKnown RBP4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FXYD3Q14802 87 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 MIC13Q5XKP0 118 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 Q6ZR03 302 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 OR8I2Q8N0Y5 310 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM58AQ8N1B3 248 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 OR10P1Q8NGE3 313 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 FAM173AQ9BQD7 235 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 PRDM14Q9GZV8 571 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 OR2D2Q9H210 308 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 NRN1Q9NPD7 142 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 TUBG2Q9NRH3 451 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 KCNIP1Q9NZI2 227 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 YLPM1P49750 1951 aaKnown RBP4.04□□□□□ -1.76
LIMA1-214ENST00000552783 IGHV3-43A0A0B4J1X8 118 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 MDFIC2A0A1B0GVS7 189 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 A0A1W2PS18 150 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 PSPNO60542 156 aa4.04□□□□□ -1.76
LIMA1-214ENST00000552783 CA1P00915 261 aaPredicted RBP4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms