RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 UBE2IP63279 158 aaKnown RBP1.65□□□□□ -2.15
VPS29-205ENST00000548539 MIAQ16674 131 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 ACSM3Q53FZ2 586 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 PABPC1L2AQ5JQF8 200 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 HIST2H3PS2Q5TEC6 136 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 ZNF705AQ6ZN79 300 aaPredicted RBP1.65□□□□□ -2.15
VPS29-205ENST00000548539 TBC1D19Q8N5T2 526 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 DEFB125Q8N687 156 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 LHFPL5Q8TAF8 219 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 DCANP1Q8TF63 244 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 KLF6Q99612 283 aaPredicted RBP1.65□□□□□ -2.15
VPS29-205ENST00000548539 FAM96AQ9H5X1 160 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 LSM5Q9Y4Y9 91 aaKnown RBP1.65□□□□□ -2.15
VPS29-205ENST00000548539 COL4A2P08572 1712 aa1.65□□□□□ -2.15
VPS29-205ENST00000548539 MAP3K5Q99683 1374 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 IGLV3-9A0A075B6K5 115 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 INMT-MINDY4F8WBC2 141 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 I3L521 148 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 KCNK1O00180 336 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 S1PR2O95136 353 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 AHSA1O95433 338 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 FAM228BP0C875 321 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 AP1S1P61966 158 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 SLC38A11Q08AI6 406 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 ZNF791Q3KP31 576 aaPredicted RBP1.64□□□□□ -2.15
VPS29-205ENST00000548539 FAM201AQ5SY85 155 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 CCDC122Q5T0U0 273 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 SSX8Q7RTT4 187 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 MNS1Q8NEH6 495 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 OR5B17Q8NGF7 314 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 OR1L8Q8NGR8 309 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 KLK6Q92876 244 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 PAQR5Q9NXK6 330 aaPredicted RBP1.64□□□□□ -2.15
VPS29-205ENST00000548539 RTEL1-TNFRSF6BF6WH68 1400 aa1.64□□□□□ -2.15
VPS29-205ENST00000548539 ZNF860A6NHJ4 632 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 J3QKU1 62 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 CREBL2O60519 120 aaPredicted RBP1.63□□□□□ -2.15
VPS29-205ENST00000548539 LYPLA2O95372 231 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 HIST1H1EP10412 219 aaKnown RBP1.63□□□□□ -2.15
VPS29-205ENST00000548539 S100A7P31151 101 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 RPL28P46779 137 aaKnown RBP1.63□□□□□ -2.15
VPS29-205ENST00000548539 CSN1S1P47710 185 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 KRTAP13-4Q3LI77 160 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 Q6ZTI0 123 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 OPTNQ96CV9 577 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 NAT8Q9UHE5 227 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 AK3Q9UIJ7 227 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 ANGPT4Q9Y264 503 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 TIMM9Q9Y5J7 89 aa1.63□□□□□ -2.15
VPS29-205ENST00000548539 A0A0J9YW62 118 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 A0A1B0GW54 56 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 M0R036 132 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 LGALS1P09382 135 aaKnown RBP1.62□□□□□ -2.15
VPS29-205ENST00000548539 KCNE1P15382 129 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 HAAOP46952 286 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 OR4D2P58180 307 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 TPI1P60174 286 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 RAB5BP61020 215 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 TMEM258P61165 79 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 AKR1C1Q04828 323 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 PMAIP1Q13794 54 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 ALKAL1Q6UXT8 129 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 OR8J2Q8NGG1 315 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 ACOT12Q8WYK0 555 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 CNBD2Q96M20 576 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 ERMAPQ96PL5 475 aaPredicted RBP1.62□□□□□ -2.15
VPS29-205ENST00000548539 CMTM6Q9NX76 183 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 NUP160Q12769 1436 aa1.62□□□□□ -2.15
VPS29-205ENST00000548539 PCNX2A6NKB5 2137 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 SLX4Q8IY92 1834 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 NAV1Q8NEY1 1877 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 REREQ9P2R6 1566 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 IGHV3-64A0A075B6Q5 118 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 TRAV38-1A0A0B4J264 116 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 SMIM23A6NLE4 172 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 EEF1E1-BLOC1S5C9J1V9 151 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 LEPROTO15243 131 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 PGLYRP1O75594 196 aaPredicted RBP1.61□□□□□ -2.15
VPS29-205ENST00000548539 PPBPP02775 128 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 RPS17P08708 135 aaKnown RBP1.61□□□□□ -2.15
VPS29-205ENST00000548539 ZNF705DP0CH99 300 aaPredicted RBP1.61□□□□□ -2.15
VPS29-205ENST00000548539 FGF6P10767 208 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 CCL5P13501 91 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 SPCS3P61009 180 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 RAB14P61106 215 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 IMPG1Q17R60 797 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 LYZL1Q6UWQ5 148 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 TMEM86BQ8N661 226 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 OR1M1Q8NGA1 313 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 SPACA4Q8TDM5 124 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 SLC35B4Q969S0 331 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 ZNF625Q96I27 306 aaPredicted RBP1.61□□□□□ -2.15
VPS29-205ENST00000548539 CCDC42Q96M95 316 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 VCX3BQ9H321 246 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 AMMECR1Q9Y4X0 333 aaPredicted RBP1.61□□□□□ -2.15
VPS29-205ENST00000548539 TIMM22Q9Y584 194 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 DENND4BO75064 1496 aaPredicted RBP1.61□□□□□ -2.15
VPS29-205ENST00000548539 ZNF532Q9HCE3 1301 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 KDM5BQ9UGL1 1544 aa1.61□□□□□ -2.15
VPS29-205ENST00000548539 GGT3PA6NGU5 568 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms