RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	KCNS2	Q9ULS6	477 aa		12.52	□□□□□ -0.4
CHFR-223	ENST00000544268	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	12.52	□□□□□ -0.41
CHFR-223	ENST00000544268		H0Y980	276 aa		12.52	□□□□□ -0.41
CHFR-223	ENST00000544268	PSPN	O60542	156 aa		12.52	□□□□□ -0.41
CHFR-223	ENST00000544268	ARL16	Q0P5N6	197 aa		12.52	□□□□□ -0.41
CHFR-223	ENST00000544268	RNF151	Q2KHN1	245 aa		12.52	□□□□□ -0.41
CHFR-223	ENST00000544268	SPIN2A	Q99865	258 aa		12.52	□□□□□ -0.41
CHFR-223	ENST00000544268	SPIN2B	Q9BPZ2	258 aa		12.52	□□□□□ -0.41
CHFR-223	ENST00000544268	ELOVL1	Q9BW60	279 aa		12.52	□□□□□ -0.41
CHFR-223	ENST00000544268	MPC1	Q9Y5U8	109 aa		12.52	□□□□□ -0.41
CHFR-223	ENST00000544268	DOCK11	Q5JSL3	2073 aa		12.52	□□□□□ -0.41
CHFR-223	ENST00000544268		A0A0G2JNJ9	132 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	CEBPZOS	A8MTT3	80 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	YPEL1	O60688	119 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	IGKV1-5	P01602	117 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	IGKV3-15	P01624	115 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	BMP5	P22003	454 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	CHRNB4	P30926	498 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	PPP1CB	P62140	327 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	SRPX	P78539	464 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	PSG7	Q13046	419 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	TPRX1	Q8N7U7	411 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	OR5D13	Q8NGL4	314 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	YPEL2	Q96QA6	119 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	RSG1	Q9BU20	258 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	VSIR	Q9H7M9	311 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	CACNG5	Q9UF02	275 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268		Q9UFV3	132 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	TRAPPC2L	Q9UL33	140 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	RELN	P78509	3460 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	ICE1	Q9Y2F5	2266 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	CHD3	Q12873	2000 aa	Known RBP	12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	OR5B21	A6NL26	309 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268		J3QT63	122 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	SERPINE2	P07093	398 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	TFPI2	P48307	235 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	RPL23	P62829	140 aa	Known RBP	12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	TLE1	Q04724	770 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	KLRB1	Q12918	225 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	PRSS8	Q16651	343 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	OR8G2P	Q6IF36	304 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	WDR73	Q6P4I2	378 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268		Q6ZR03	302 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	OR10V1	Q8NGI7	309 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	ANAPC16	Q96DE5	110 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	RBKS	Q9H477	322 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	RPRM	Q9NS64	109 aa		12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	RBM7	Q9Y580	266 aa	Known RBP	12.51	□□□□□ -0.41
CHFR-223	ENST00000544268	KBTBD11	O94819	623 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	IFNA1	P01562	189 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	SRP14	P37108	136 aa	Known RBP	12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	KLF3	P57682	345 aa	Predicted RBP	12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	SRSF7	Q16629	238 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	TMEM183B	Q1AE95	376 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	ZNF585B	Q52M93	769 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	LCN15	Q6UWW0	184 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	SLC35E1	Q96K37	410 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	TMEM106B	Q9NUM4	274 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	RPS16	P62249	146 aa	Known RBP	12.5	□□□□□ -0.41
CHFR-223	ENST00000544268		Q5PR19	223 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	TOMM20L	Q6UXN7	152 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	TMEM256	Q8N2U0	113 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	PRORY	Q9H606	182 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	KALRN	O60229	2985 aa		12.5	□□□□□ -0.41
CHFR-223	ENST00000544268	CLEC18A	A5D8T8	446 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	TMEM8B	A6NDV4	472 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	RAMP3	O60896	148 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	IFNA5	P01569	189 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	CLEC12B	Q2HXU8	276 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	TDRG1	Q3Y452	100 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	CLEC18C	Q8NCF0	446 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	OR1L1	Q8NH94	360 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	ORAOV1	Q8WV07	137 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	C5orf30	Q96GV9	206 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	POLE	Q07864	2286 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	NBAS	A2RRP1	2371 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	PKD1L2	Q7Z442	2459 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	CECR9	P0C854	216 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	FGF8	P55075	233 aa	Predicted RBP	12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	ERVK11-1	P61568	191 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	LCN2	P80188	198 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	TPTE2P1	Q5T6R2	138 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	ZNF497	Q6ZNH5	498 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	HAPLN4	Q86UW8	402 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	PLPPR2	Q96GM1	343 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	METRN	Q9UJH8	293 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	SLC25A15	Q9Y619	301 aa		12.49	□□□□□ -0.41
CHFR-223	ENST00000544268	MLNR	O43193	412 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	CTXN2	P0C2S0	81 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	APOBEC3A	P31941	199 aa	Predicted RBP	12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	ZNF726P1	Q15940	193 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	PRAMEF6	Q5VXH4	476 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	ZNF808	Q8N4W9	903 aa	Predicted RBP	12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	CORO2A	Q92828	525 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	RTL8A	Q9BWD3	113 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	PKIB	Q9C010	78 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	PLK3	Q9H4B4	646 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	OBP2B	Q9NPH6	170 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	CCL25	O15444	150 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	NUPR1	O60356	82 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms