RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ATP5IP56385 69 aaPredicted RBP11.88□□□□□ -0.51
USP3-204ENST00000540797 TUSC1Q2TAM9 212 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 ZNF880Q6PDB4 577 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 PPP1R27Q86WC6 154 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 OR51G1Q8NGK1 321 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 INTS1Q8N201 2190 aaKnown RBP11.88□□□□□ -0.51
USP3-204ENST00000540797 ZNF253O75346 499 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 ZNF385CQ66K41 422 aaPredicted RBP11.88□□□□□ -0.51
USP3-204ENST00000540797 PTBP3O95758 552 aaKnown RBP11.87□□□□□ -0.51
USP3-204ENST00000540797 IGHV1-46P01743 117 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 CRISP2P16562 243 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 CXCL2P19875 107 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 WDFY1Q8IWB7 410 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 PLPPR1Q8TBJ4 325 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 SIP14410 1827 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 TMEM8BA6NDV4 472 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 C8orf88P0DMB2 117 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 IGFBP3P17936 291 aaPredicted RBP11.87□□□□□ -0.51
USP3-204ENST00000540797 RPS11P62280 158 aaKnown RBP eCLIP11.87□□□□□ -0.51
USP3-204ENST00000540797 HLA-DRB5Q30154 266 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 ZNF362Q5T0B9 420 aaPredicted RBP11.87□□□□□ -0.51
USP3-204ENST00000540797 A0A0G2JLM5 398 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 A0A0G2JNJ9 132 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 ISLRO14498 428 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 CA2P00918 260 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 IL4P05112 153 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 TOMM20LQ6UXN7 152 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 Q9UFV3 132 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 SULT1A2P50226 295 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 FBXL7Q9UJT9 491 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 C17orf98A8MV24 154 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 IGHV3-23P01764 117 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 HSPB7Q9UBY9 170 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 RALGAPA1Q6GYQ0 2036 aa11.87□□□□□ -0.51
USP3-204ENST00000540797 MELTFP08582 738 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 PRB3Q04118 309 aaPredicted RBP11.86□□□□□ -0.51
USP3-204ENST00000540797 EIF4E3Q8N5X7 224 aaKnown RBP11.86□□□□□ -0.51
USP3-204ENST00000540797 ARPC1AQ92747 370 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 SNRPD3P62318 126 aaKnown RBP11.86□□□□□ -0.51
USP3-204ENST00000540797 OR4A47Q6IF82 309 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 SYT8Q8NBV8 401 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 ANGPTL6Q8NI99 470 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 ELOVL1Q9BW60 279 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 OR51M1Q9H341 326 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 K7ENP7 123 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 NDUFB4O95168 129 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 STPG2Q8N412 459 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 VAMP8Q9BV40 100 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 CACNA1BQ00975 2339 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 CCL1P22362 96 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 DSCR9P59020 149 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 JMJD8Q96S16 334 aa11.86□□□□□ -0.51
USP3-204ENST00000540797 IGHV3OR16-13A0A075B7E8 117 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 IGHV3-74A0A0B4J1X5 117 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 C7orf77A4D0Y5 90 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 FAM74A7A6NL05 159 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 C1QL1O75973 258 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 TWIST1Q15672 202 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 COLCA1Q6ZS62 124 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 LRP11Q86VZ4 500 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 TXNDC17Q9BRA2 123 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 M0R2Z0 102 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 PHOX2AO14813 284 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 IER3P46695 156 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 ISOC2Q96AB3 205 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 NPFFR1Q9GZQ6 430 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 PLSCR2Q9NRY7 297 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 METRNQ9UJH8 293 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 S4R3C0 116 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 ZNF672Q499Z4 452 aaPredicted RBP11.85□□□□□ -0.51
USP3-204ENST00000540797 AQP10Q96PS8 301 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 TMEM133Q9H2Q1 129 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 ELOA3CA0A087WX78 387 aaPredicted RBP11.85□□□□□ -0.51
USP3-204ENST00000540797 A8MWL6 223 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 CRYGSP22914 178 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 ZNF319Q9P2F9 582 aa11.85□□□□□ -0.51
USP3-204ENST00000540797 H3BTX0 84 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 TFF1P04155 84 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 TSPOP30536 169 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 EFNA4P52798 201 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 GAS1P54826 345 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 HIST3H3Q16695 136 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 PLA2G2CQ5R387 149 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 NABP2Q9BQ15 211 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 IGKV1-9A0A0C4DH69 117 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 G0S2P27469 103 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 PMS2P11Q13670 270 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 OR10S1Q8NGN2 331 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 CHAC2Q8WUX2 184 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 RAB24Q969Q5 203 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 COL25A1Q9BXS0 654 aaPredicted RBP11.84□□□□□ -0.51
USP3-204ENST00000540797 MBD3L4A6NDZ8 208 aaPredicted RBP11.84□□□□□ -0.51
USP3-204ENST00000540797 MBD3L3A6NE82 208 aaPredicted RBP11.84□□□□□ -0.51
USP3-204ENST00000540797 MBD3L5A6NJ08 208 aaPredicted RBP11.84□□□□□ -0.51
USP3-204ENST00000540797 C20orf204Q6ZNR8 217 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 MBD3L2Q8NHZ7 208 aaPredicted RBP11.84□□□□□ -0.51
USP3-204ENST00000540797 C19orf24Q9BVV8 132 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 SLC25A15Q9Y619 301 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 IGKV3-15P01624 115 aa11.84□□□□□ -0.51
USP3-204ENST00000540797 IGHG3P01860 377 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms