RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 HIGD1AQ9Y241 93 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 HES2Q9Y543 173 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 TRAPPC1Q9Y5R8 145 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 SPCS1Q9Y6A9 102 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 SIRT4Q9Y6E7 314 aaPredicted RBP4.56□□□□□ -1.68
CD44-236ENST00000533222 THSD7BQ9C0I4 1608 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 CCDC88CQ9P219 2028 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 ARFGEF1Q9Y6D6 1849 aa4.56□□□□□ -1.68
CD44-236ENST00000533222 A0A0U1RRA0 63 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 MBD3L5A6NJ08 208 aaPredicted RBP4.55□□□□□ -1.68
CD44-236ENST00000533222 ZNF732B4DXR9 585 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 GGTLC3B5MD39 225 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 CSN3P07498 182 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 IRF1P10914 325 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 SLC25A6P12236 298 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 COX7A2P14406 83 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 CRISP2P16562 243 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 PRTN3P24158 256 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 HOXD9P28356 352 aaPredicted RBP4.55□□□□□ -1.68
CD44-236ENST00000533222 RPL12P30050 165 aaKnown RBP4.55□□□□□ -1.68
CD44-236ENST00000533222 CCR2P41597 374 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 OR1D5P58170 312 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 RPL31P62899 125 aaKnown RBP4.55□□□□□ -1.68
CD44-236ENST00000533222 FMODQ06828 376 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 ZNF415Q09FC8 603 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 FOXF2Q12947 444 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 CLEC12BQ2HXU8 276 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 GGTA1PQ4G0N0 100 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 DGAT2L7PQ6IED9 249 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 SIGLEC15Q6ZMC9 328 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 Q6ZS49 121 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 SGPP2Q8IWX5 399 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 C10orf111Q8N326 155 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 OR4X2Q8NGF9 303 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 OR51H1Q8NH63 302 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 FNDC9Q8TBE3 224 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 SCGB1C1Q8TD33 95 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 SLC37A2Q8TED4 501 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 C2orf15Q8WU43 125 aaKnown RBP4.55□□□□□ -1.68
CD44-236ENST00000533222 TMEM37Q8WXS4 190 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 LSM10Q969L4 123 aaKnown RBP4.55□□□□□ -1.68
CD44-236ENST00000533222 BORCS7Q96B45 105 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 KCNS1Q96KK3 526 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 MCEEQ96PE7 176 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 SCNM1Q9BWG6 230 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 OR2H1Q9GZK4 316 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 IKZF5Q9H5V7 419 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 NRN1Q9NPD7 142 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 TVP23BQ9NYZ1 205 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 LHX3Q9UBR4 397 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 KLK11Q9UBX7 282 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 PRNDQ9UKY0 176 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 RARRES3Q9UL19 164 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 TP53TG1Q9Y2A0 90 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 NSG2Q9Y328 171 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 FIS1Q9Y3D6 152 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 ANKRD12Q6UB98 2062 aa4.55□□□□□ -1.68
CD44-236ENST00000533222 ANKRD36A6QL64 1941 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 LOC102724200A0A096LPH7 203 aaPredicted RBP4.54□□□□□ -1.68
CD44-236ENST00000533222 TRGV10A0A0A0MS01 117 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 A0A0A6YYD5 115 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 MUC21A0A0G2JKD1 596 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 MUC21A0A140T8X8 626 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 LOC102725191A0A1B0GVB3 256 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 TSPAN11A1L157 253 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 LRRC30A6NM36 301 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 OR1I1O60431 355 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 GPR137BO60478 399 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 PAGE4O60829 102 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 PLAUP00749 431 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 H2BFMP0C1H6 154 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 S100A3P33764 101 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 GLRXP35754 106 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 APOBEC1P41238 236 aaKnown RBP4.54□□□□□ -1.68
CD44-236ENST00000533222 NOVP48745 357 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 EMP1P54849 157 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 XGP55808 180 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 DYNLT1P63172 113 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 CX3CL1P78423 397 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 ZNF85Q03923 595 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 GAGE2BQ13066 116 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 CATR1Q13166 79 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 FAM53BQ14153 422 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 CDK5R1Q15078 307 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 C3AR1Q16581 482 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 FAM174BQ3ZCQ3 159 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 TIGITQ495A1 244 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 GAGE2EQ4V326 116 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 TTC32Q5I0X7 151 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 MUC21Q5SSG8 566 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 LYSMD4Q5XG99 296 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 RASL11AQ6T310 242 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 TMEM64Q6YI46 380 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 ADAMTSL5Q6ZMM2 481 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 LINC00336Q6ZUF6 198 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 ZNF433Q8N7K0 673 aaPredicted RBP4.54□□□□□ -1.68
CD44-236ENST00000533222 OR8B3Q8NGG8 313 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 OR10G7Q8NGN6 311 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 OR1F12Q8NHA8 337 aa4.54□□□□□ -1.68
CD44-236ENST00000533222 RDH5Q92781 318 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms