RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	FXYD4	P59646	89 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	RPL30	P62888	115 aa	Known RBP	11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	C19orf54	Q5BKX5	351 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	CXorf66	Q5JRM2	361 aa	Predicted RBP	11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	ZNF562	Q6V9R5	426 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	PPP1R27	Q86WC6	154 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	TMEM17	Q86X19	198 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	SLC7A5P1	Q8MH63	180 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	OR4S2	Q8NH73	311 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	TCTEX1D2	Q8WW35	142 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	CCL28	Q9NRJ3	127 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	MTFP1	Q9UDX5	166 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	FBXO7	Q9Y3I1	522 aa		11.79	□□□□□ -0.52
CPSF1-208	ENST00000532560	TRAV41	A0A0B4J266	112 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	SRRM4	A7MD48	611 aa	Known RBP	11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	SSNA1	O43805	119 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	FCGR3B	O75015	233 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	PF4V1	P10720	104 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	PSMB8	P28062	276 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	KIR2DS2	P43631	304 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	UBE2K	P61086	200 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	VMA21	Q3ZAQ7	101 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	ACTBL2	Q562R1	376 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	C9orf62	Q8N4C0	152 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	TCTEX1D1	Q8N7M0	179 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	ZNF431	Q8TF32	576 aa	Predicted RBP	11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	CLCC1	Q96S66	551 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	ZNF2	Q9BSG1	426 aa	Predicted RBP	11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	WSB1	Q9Y6I7	421 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560	PLXNB1	O43157	2135 aa		11.78	□□□□□ -0.52
CPSF1-208	ENST00000532560		G3V318	75 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	NDUFB6	O95139	128 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	RPLP1	P05386	114 aa	Known RBP	11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	CCR6	P51684	374 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	SSBP2	P81877	361 aa	Predicted RBP	11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	ECSCR	Q19T08	205 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	OR2B11	Q5JQS5	317 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	VAX1	Q5SQQ9	334 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	ZNF818P	Q6ZRF7	136 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	TEX45	Q8NA69	505 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	OR11H7	Q8NGC8	314 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	MYOZ3	Q8TDC0	251 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	ARPC1A	Q92747	370 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	FXYD6	Q9H0Q3	95 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	HSPB11	Q9Y547	144 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	CMYA5	Q8N3K9	4069 aa		11.77	□□□□□ -0.53
CPSF1-208	ENST00000532560	ARPC1B	O15143	372 aa	Known RBP	11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	RBFOX2	O43251	390 aa	Known RBP eCLIP	11.76	□□□□□ -0.53	2e-7	■■■■□ 25.8
CPSF1-208	ENST00000532560	TNFSF12	O43508	249 aa		11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	CREBL2	O60519	120 aa	Predicted RBP	11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	IGLV1-40	P01703	118 aa		11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	SAA1	P0DJI8	122 aa	Predicted RBP	11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	EGR2	P11161	476 aa	Predicted RBP	11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	TBP	P20226	339 aa		11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	BRWD1-AS2	P59051	145 aa		11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	TMEM267	Q0VDI3	215 aa	Predicted RBP	11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	CATR1	Q13166	79 aa		11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	FXYD3	Q14802	87 aa		11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	RBMS2	Q15434	407 aa	Known RBP	11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	RNASE12	Q5GAN4	147 aa	Known RBP	11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	LAMTOR1	Q6IAA8	161 aa		11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	ABHD5	Q8WTS1	349 aa		11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	ZNF436	Q9C0F3	470 aa	Predicted RBP	11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	KLK11	Q9UBX7	282 aa		11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	FOXA2	Q9Y261	457 aa	Predicted RBP	11.76	□□□□□ -0.53
CPSF1-208	ENST00000532560	PF4	P02776	101 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	GIP	P09681	153 aa	Predicted RBP	11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	AKAIN1	P0CW23	69 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	GNRHR	P30968	328 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	CDX1	P47902	265 aa	Predicted RBP	11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	RAP2B	P61225	183 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	TSPAN5	P62079	268 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	PJVK	Q0ZLH3	352 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	MRGPRG-AS1	Q2M3A8	158 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	AKIRIN2	Q53H80	203 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560		Q5BKY6	102 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	LCNL1	Q6ZST4	164 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	ZNF695	Q8IW36	515 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	KLHL30-AS1	Q8NEE0	82 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	GPHA2	Q96T91	129 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560	BOLA1	Q9Y3E2	137 aa		11.75	□□□□□ -0.53
CPSF1-208	ENST00000532560		A0A1W2PN81	502 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	ANKRD34B	A5PLL1	514 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	NUDT19	A8MXV4	375 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560		M0QYG6	137 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	SOX15	O60248	233 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	CHRNA7	P36544	502 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	DHODH	Q02127	395 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	PRSS8	Q16651	343 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	RNASE10	Q5GAN6	216 aa	Known RBP	11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	AADACL3	Q5VUY0	350 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	ETV3L	Q6ZN32	361 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	IDO2	Q6ZQW0	420 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	C18orf65	Q6ZTR6	163 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	SPAG16	Q8N0X2	631 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	OR5M8	Q8NGP6	311 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	VSTM2A	Q8TAG5	236 aa		11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	FAM103A1	Q9BTL3	118 aa	Known RBP	11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	ALX4	Q9H161	411 aa	Predicted RBP	11.74	□□□□□ -0.53
CPSF1-208	ENST00000532560	GPR31	O00270	319 aa		11.73	□□□□□ -0.53

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